Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   QSG85_RS01575 Genome accession   NZ_CP127906
Coordinates   340655..341128 (+) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335655..346128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01550 (QSG85_01550) - 336118..338223 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QSG85_RS01555 (QSG85_01555) - 338263..338393 (-) 131 Protein_296 hypothetical protein -
  QSG85_RS01560 (QSG85_01560) rpoZ 338432..338710 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QSG85_RS01565 (QSG85_01565) gmk 338783..339412 (-) 630 WP_000015937.1 guanylate kinase -
  QSG85_RS01570 (QSG85_01570) ispH 339535..340485 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QSG85_RS01575 (QSG85_01575) fimU 340655..341128 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  QSG85_RS01580 (QSG85_01580) pilV 341122..341682 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QSG85_RS01585 (QSG85_01585) pilW 341683..342684 (+) 1002 WP_000079191.1 PilW family protein Machinery gene
  QSG85_RS01590 (QSG85_01590) pilX 342681..343499 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=845154 QSG85_RS01575 WP_001214059.1 340655..341128(+) (fimU) [Acinetobacter baumannii strain SAAb472]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=845154 QSG85_RS01575 WP_001214059.1 340655..341128(+) (fimU) [Acinetobacter baumannii strain SAAb472]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994