Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QSG85_RS01520 Genome accession   NZ_CP127906
Coordinates   330914..331363 (+) Length   149 a.a.
NCBI ID   WP_024436693.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325914..336363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01500 (QSG85_01500) - 327305..328192 (+) 888 WP_001017320.1 metal-dependent hydrolase -
  QSG85_RS01505 (QSG85_01505) - 328323..328913 (+) 591 WP_000846931.1 LemA family protein -
  QSG85_RS01510 (QSG85_01510) - 328935..330017 (+) 1083 WP_001246384.1 YgcG family protein -
  QSG85_RS01515 (QSG85_01515) - 330011..330571 (+) 561 WP_000258955.1 TPM domain-containing protein -
  QSG85_RS01520 (QSG85_01520) pilA 330914..331363 (+) 450 WP_024436693.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QSG85_RS01525 (QSG85_01525) - 331414..332724 (+) 1311 WP_280033739.1 O-antigen ligase family protein -
  QSG85_RS01530 (QSG85_01530) - 332831..334459 (+) 1629 WP_272228433.1 PglL family O-oligosaccharyltransferase -
  QSG85_RS01535 (QSG85_01535) bfr 334501..334965 (-) 465 WP_000678123.1 bacterioferritin -
  QSG85_RS01540 (QSG85_01540) - 335210..335404 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  QSG85_RS01545 (QSG85_01545) - 335614..335997 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15139.20 Da        Isoelectric Point: 7.7743

>NTDB_id=845153 QSG85_RS01520 WP_024436693.1 330914..331363(+) (pilA) [Acinetobacter baumannii strain SAAb472]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQSYIAKSQASEAFTLADGLKTTIATNLQAGTCFANGSAAATATDSVTGKY
GTAEILADTTSGSNGCGIKYTFNPSNVSAKLKNGVIGIAVSENGVLKKSTVTATTSTLNEYLPQSFSGS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=845153 QSG85_RS01520 WP_024436693.1 330914..331363(+) (pilA) [Acinetobacter baumannii strain SAAb472]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATCGGTATTTTGGCAGCAATTGCGAT
TCCTGCTTATCAGAGTTATATTGCAAAATCTCAAGCTTCTGAAGCATTTACATTAGCAGATGGTCTAAAAACAACTATTG
CTACTAACTTGCAAGCTGGTACATGTTTCGCTAATGGTTCAGCTGCAGCAACAGCAACTGACTCAGTTACGGGTAAATAT
GGTACAGCAGAAATTTTAGCAGATACAACGTCTGGTAGTAATGGATGTGGGATTAAATATACATTTAATCCATCAAATGT
ATCTGCTAAGTTGAAAAACGGAGTTATTGGTATTGCTGTAAGTGAAAATGGTGTATTGAAAAAATCTACAGTAACAGCGA
CAACTTCTACATTAAATGAATATTTACCACAATCTTTCTCTGGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

67.785

100

0.678
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40

100

0.403
  pilA Vibrio cholerae strain A1552

40

100

0.403
  pilA Vibrio cholerae C6706

40

100

0.403
  pilA Pseudomonas aeruginosa PAK

37.179

100

0.389