Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QSG84_RS09920 Genome accession   NZ_CP127893
Coordinates   2117426..2118913 (+) Length   495 a.a.
NCBI ID   WP_317030240.1    Uniprot ID   A0AA97F1Q9
Organism   Acinetobacter sp. SAAs470     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112426..2123913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS09895 (QSG84_09890) ribD 2113354..2114457 (-) 1104 WP_317030237.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  QSG84_RS09900 (QSG84_09895) nrdR 2114492..2114950 (-) 459 WP_317032661.1 transcriptional regulator NrdR -
  QSG84_RS09905 (QSG84_09900) - 2115084..2116475 (-) 1392 WP_317030238.1 ammonium transporter -
  QSG84_RS09910 (QSG84_09905) glnK 2116539..2116877 (-) 339 WP_067722465.1 P-II family nitrogen regulator -
  QSG84_RS09915 (QSG84_09910) - 2117134..2117361 (+) 228 WP_317030239.1 accessory factor UbiK family protein -
  QSG84_RS09920 (QSG84_09915) comM 2117426..2118913 (+) 1488 WP_317030240.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QSG84_RS09925 (QSG84_09920) - 2118981..2120168 (-) 1188 WP_317030241.1 MFS transporter -
  QSG84_RS09930 (QSG84_09925) - 2120653..2121423 (-) 771 WP_317030242.1 TorF family putative porin -
  QSG84_RS09935 (QSG84_09930) - 2122056..2123393 (+) 1338 WP_317030243.1 OprD family outer membrane porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54417.58 Da        Isoelectric Point: 7.6570

>NTDB_id=845133 QSG84_RS09920 WP_317030240.1 2117426..2118913(+) (comM) [Acinetobacter sp. SAAs470]
MSLAKVYTRGLFGIYAPQIEVEVHISQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIATEQLPQNATENIEFIGELALDGHLRPVTGALSIAIACQKDAHQLILPLDNADEAAQLNALTVFAAQHL
KQVCDHLQQLTLMDAHHLSPQATIASHAPDLAEVKGQIRPRRALEIAAAGGHSILFRGPPGTGKTLLASRLASILPPLNL
QENLEVASIYSVANMPHHFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKQ
IIISRASRQISFPANFQLIAAMNPCPCGYAFNQDQRCQCSATTIQRYQQRISGPLLDRIDLHIDVPPLSVDELHRHQVVE
NSATVQKRVINAYEKQIQRQQCLNMALNPQQLEKFIVLDHVAMQMLQHAQQRLKLSARSYHRVLRVARTIADLADADQVT
TTHLSEALSYRHAEH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=845133 QSG84_RS09920 WP_317030240.1 2117426..2118913(+) (comM) [Acinetobacter sp. SAAs470]
ATGTCGCTTGCCAAAGTTTATACCCGTGGCCTATTCGGTATTTACGCCCCACAGATAGAGGTTGAAGTCCATATTAGTCA
AGGACTTCCCTCTCTAACTATTGTTGGATTAGCTGAAGCTGCTGTCCGTGAAAGTAAAGATCGTGTACGTTCTGCCATTA
TTAATAGTGGCTTTCAATTTCCCACTAAACGCCTCACGATTAATCTTGCGCCAGCAGATTTGCCCAAAGATGGTTCAAGA
CTCGATTTAGCAATTGCATTAGGCATCTTGATTGCCACAGAACAGTTACCACAAAATGCAACAGAAAATATTGAATTTAT
TGGAGAATTAGCACTAGATGGACACCTTCGCCCTGTTACTGGTGCATTAAGTATTGCAATTGCTTGTCAAAAAGATGCAC
ATCAACTGATCTTACCACTCGACAATGCTGATGAAGCAGCTCAGCTTAATGCATTAACCGTTTTTGCAGCACAGCACTTA
AAACAGGTTTGTGATCATTTACAACAGTTAACTTTAATGGATGCTCACCATCTTTCTCCTCAAGCAACGATAGCAAGCCA
CGCACCTGATCTGGCAGAAGTCAAAGGTCAAATTCGTCCACGGCGCGCATTAGAAATTGCAGCTGCTGGTGGTCACTCTA
TTTTATTTAGAGGCCCACCGGGGACTGGTAAAACCTTATTGGCTTCTCGCTTAGCCAGTATCTTACCTCCGCTAAATTTA
CAAGAAAACTTAGAAGTTGCCAGTATTTATTCGGTCGCCAATATGCCGCATCATTTTGGTCAAAGGCCCTTTCGTGCACC
ACACCATACTGCTTCAGCGGTGGCTTTAGTCGGTGGTGGTTCTCAGCCTAAGCCCGGGGAAATTACTTTAGCCCATTTGG
GCGTATTATTTTTAGATGAATTACCAGAGTTTGATCGTAAAGTGCTAGAGGTATTAAGACAACCTCTTGAATCAAAGCAA
ATTATCATTTCAAGGGCATCTAGGCAAATTAGCTTTCCTGCAAATTTTCAACTGATTGCAGCCATGAACCCATGTCCCTG
TGGCTATGCTTTTAATCAGGATCAGCGCTGCCAATGCTCTGCCACGACCATTCAACGCTATCAACAACGGATTTCGGGAC
CACTACTTGATCGCATTGATTTACATATTGATGTGCCGCCATTATCTGTAGATGAATTACATCGTCATCAAGTCGTCGAA
AACTCCGCAACTGTTCAAAAACGTGTGATCAATGCCTATGAAAAACAAATACAGCGACAACAATGCTTAAATATGGCTTT
AAACCCTCAACAATTAGAAAAATTTATTGTTTTAGATCATGTTGCGATGCAAATGCTACAGCATGCCCAGCAACGATTAA
AATTATCAGCGCGCAGTTATCATCGTGTACTACGCGTTGCTCGTACTATTGCGGATTTAGCTGATGCTGATCAAGTAACA
ACGACTCATCTAAGTGAAGCCCTTTCCTATCGTCATGCTGAACACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

50.8

100

0.513
  comM Legionella pneumophila strain ERS1305867

50.8

100

0.513
  comM Glaesserella parasuis strain SC1401

49.501

100

0.501
  comM Vibrio campbellii strain DS40M4

49.697

100

0.497
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio cholerae strain A1552

49.091

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.461