Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QSG83_RS14675 Genome accession   NZ_CP127892
Coordinates   2824191..2825678 (+) Length   495 a.a.
NCBI ID   WP_317028073.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2819191..2830678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS14650 (QSG83_14660) ribD 2820070..2821173 (-) 1104 WP_317028639.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  QSG83_RS14655 (QSG83_14665) nrdR 2821210..2821668 (-) 459 WP_317028071.1 transcriptional regulator NrdR -
  QSG83_RS14660 (QSG83_14670) - 2821808..2823217 (-) 1410 WP_317028072.1 ammonium transporter -
  QSG83_RS14665 (QSG83_14675) glnK 2823280..2823618 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  QSG83_RS14670 (QSG83_14680) - 2823894..2824121 (+) 228 WP_168525650.1 accessory factor UbiK family protein -
  QSG83_RS14675 (QSG83_14685) comM 2824191..2825678 (+) 1488 WP_317028073.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QSG83_RS14680 (QSG83_14690) - 2825801..2826583 (-) 783 WP_317028074.1 TorF family putative porin -
  QSG83_RS14685 (QSG83_14695) - 2827724..2829034 (+) 1311 WP_096902242.1 OprD family outer membrane porin -
  QSG83_RS14690 (QSG83_14700) ppa 2829134..2829670 (-) 537 WP_178318302.1 inorganic diphosphatase -
  QSG83_RS14695 (QSG83_14705) - 2829795..2830193 (-) 399 WP_096902243.1 MAPEG family protein -
  QSG83_RS14700 (QSG83_14710) - 2830298..2830678 (+) 381 WP_004975646.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54011.88 Da        Isoelectric Point: 7.8117

>NTDB_id=845110 QSG83_RS14675 WP_317028073.1 2824191..2825678(+) (comM) [Acinetobacter towneri strain SAAt401]
MSFAKVYTRGLLGLHAPAIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPEQSTESLEFIGELALDGQLRPTTGTLSIAIACQQAQHRLVLPEQNAQEAAQLPDFEVFAATHL
KQVCEHLAQSQPLNKVTATAQPQLSHSAFDLVDVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLSSILPPLNM
QENLEVASIYSVANSPHTFGQRPFRAPHHTASAVALVGGGSYPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDVRCQCSTESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDSRPVE
DSETVRKRVIQAYELQMQRQKGLNMSLSPQQLEKFALLDGTAQNILTIAQQRLNLSARAYHRVLRVARTIADLAQSEQIH
SAHLSEALSYRGNPA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=845110 QSG83_RS14675 WP_317028073.1 2824191..2825678(+) (comM) [Acinetobacter towneri strain SAAt401]
ATGTCTTTTGCCAAAGTGTATACGCGGGGGCTGCTCGGCTTGCACGCCCCTGCTATTGAAGTTGAAGTCCATCTGAGTCA
AGGTTTACCTTCTTTAACCATTGTCGGTCTAGCCGAAGCTGCCGTACGTGAGAGTAAAGATCGGGTACGCTCTGCCATTA
TTAACAGTGGTTTTCAATTTCCGACCAAACGTCTGACCATTAATTTAGCGCCTGCCGACTTGCCCAAAGATGGTTCGCGT
TTGGACTTAGCCATTGCTTTAGGCATTTTAATTGCTTCGGGACAATTGCCCGAACAAAGCACTGAAAGTTTAGAGTTTAT
TGGAGAATTGGCTTTAGATGGTCAATTGCGTCCCACCACAGGCACACTCAGTATTGCGATTGCCTGCCAACAAGCACAGC
ATCGTTTGGTTTTACCTGAACAAAATGCACAAGAAGCTGCTCAATTGCCTGACTTTGAAGTCTTTGCCGCCACACATTTA
AAACAAGTTTGCGAACATTTGGCACAAAGCCAGCCTTTAAATAAAGTCACCGCGACTGCCCAACCACAGTTATCACATTC
CGCCTTTGATTTAGTCGATGTTAAAGGACAGTTGCGCCCACGACGTGCTTTGGAAATTGCGGCTGCAGGTGGACATTCAT
TGCTATTCAAAGGCCCACCTGGTACAGGCAAAACCTTATTGGCATCTAGGCTTTCCAGTATTTTACCGCCATTGAATATG
CAGGAAAATTTAGAGGTTGCCAGTATCTATTCAGTGGCCAATAGCCCGCATACGTTTGGACAGCGTCCTTTTCGCGCCCC
ACATCATACTGCCTCTGCCGTAGCATTGGTCGGGGGTGGCTCATATCCAAAACCTGGCGAAATCACGCTGGCGCACTTAG
GCGTGTTGTTTTTAGATGAATTACCTGAGTTTGATAAGAAAGTATTAGAAGTATTGCGGCAACCGTTGGAGTCTAAAGAA
ATTGTGATTTCTCGGGCATCGCGACAAATTACCTTTCCTGCGAACTTTCAATTGGTGGCTGCAATGAACCCCTGCCCCTG
TGGTTATGCTTTTAATCAGGACGTGCGCTGTCAATGCTCTACAGAAAGTATTAAACGCTATCAAAATCGTATTTCAGGGC
CACTGTTAGACCGCATTGATTTACATATTGATGTTCCACCACTACAAGCCCATGAATTACAAGACAGTAGACCTGTTGAA
GATTCCGAAACGGTGCGAAAACGCGTAATTCAAGCTTATGAATTGCAAATGCAACGACAAAAGGGCTTAAATATGTCGCT
CAGCCCACAACAATTAGAAAAATTTGCCCTATTAGATGGCACTGCACAGAATATTTTAACCATTGCACAACAACGGTTAA
ATTTGTCTGCACGCGCTTATCATCGGGTATTACGCGTTGCACGTACTATTGCAGACTTAGCGCAAAGTGAACAGATTCAC
AGTGCCCATTTAAGTGAAGCGTTGTCTTATCGGGGCAATCCAGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Vibrio cholerae strain A1552

50.303

100

0.503
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Glaesserella parasuis strain SC1401

49.203

100

0.499
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475