Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QSG83_RS02275 Genome accession   NZ_CP127892
Coordinates   262645..263118 (+) Length   157 a.a.
NCBI ID   WP_394804448.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 257645..268118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS02255 (QSG83_02260) - 258109..259530 (+) 1422 WP_178319369.1 FAD-dependent oxidoreductase -
  QSG83_RS02260 (QSG83_02265) - 259819..260409 (+) 591 WP_178319370.1 LemA family protein -
  QSG83_RS02265 (QSG83_02270) - 260430..261530 (+) 1101 WP_178319371.1 YgcG family protein -
  QSG83_RS02270 (QSG83_02275) - 261524..262084 (+) 561 WP_178319372.1 TPM domain-containing protein -
  QSG83_RS02275 (QSG83_02280) pilA 262645..263118 (+) 474 WP_394804448.1 pilin Machinery gene
  QSG83_RS02280 - 263301..263438 (+) 138 WP_178319376.1 hypothetical protein -
  QSG83_RS16180 - 263467..263607 (+) 141 WP_372238849.1 hypothetical protein -
  QSG83_RS02285 (QSG83_02285) tfpZ 263652..264392 (+) 741 WP_178319377.1 TfpX/TfpZ family type IV pilin accessory protein -
  QSG83_RS02290 (QSG83_02290) - 264545..266176 (+) 1632 WP_178319378.1 PglL family O-oligosaccharyltransferase -
  QSG83_RS02295 (QSG83_02295) - 266395..266637 (+) 243 WP_004974509.1 type II toxin-antitoxin system ParD family antitoxin -
  QSG83_RS02300 (QSG83_02300) - 266630..266923 (+) 294 WP_178319379.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QSG83_RS02305 (QSG83_02305) bfr 267089..267553 (-) 465 WP_004974510.1 bacterioferritin -
  QSG83_RS02310 (QSG83_02310) - 267805..267999 (-) 195 WP_131260630.1 bacterioferritin-associated ferredoxin -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 15891.32 Da        Isoelectric Point: 8.9485

>NTDB_id=845081 QSG83_RS02275 WP_394804448.1 262645..263118(+) (pilA) [Acinetobacter towneri strain SAAt401]
MQKGFTLIELMIVVAIIGILAAVAIPAYQDYTKRAKVTEGIALAAGAKTTVVENAASAARYDLGYSTPTATKDVKSVVIN
NANGQITITYAAPVQDNGTIILRPYTGTAAAPVALPASTAAYTPPATQINWACGAAGAAAPAVAGTLEAKLAPSNCR

Nucleotide


Download         Length: 474 bp        

>NTDB_id=845081 QSG83_RS02275 WP_394804448.1 262645..263118(+) (pilA) [Acinetobacter towneri strain SAAt401]
ATGCAAAAAGGTTTTACCCTTATCGAATTAATGATCGTTGTAGCGATCATTGGTATTTTGGCTGCAGTGGCAATTCCTGC
GTATCAAGACTATACCAAGCGTGCAAAGGTAACAGAAGGTATTGCTTTGGCTGCTGGTGCAAAGACCACAGTTGTTGAGA
ATGCTGCAAGTGCAGCTCGATATGATTTAGGCTATTCAACGCCAACAGCTACTAAAGATGTAAAGTCAGTAGTGATTAAT
AATGCTAATGGGCAGATTACCATCACTTATGCTGCTCCAGTTCAGGATAATGGTACAATTATTTTACGTCCATATACTGG
TACTGCAGCAGCACCAGTAGCATTACCAGCTTCAACAGCAGCTTACACTCCGCCAGCAACTCAAATCAACTGGGCTTGTG
GTGCTGCTGGTGCAGCAGCTCCAGCTGTTGCAGGTACTTTAGAAGCAAAACTTGCTCCTTCTAACTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(34-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

50.898

100

0.541
  pilA2 Legionella pneumophila strain ERS1305867

49.068

100

0.503
  pilA2 Legionella pneumophila str. Paris

48.447

100

0.497
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.436

100

0.465
  pilA/pilA1 Eikenella corrodens VA1

42.262

100

0.452