Detailed information NTG0844573

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: VZG88_RS05295
• Genome accession: NZ_CP143871
• Coordinates: 1073159..1074274 (-)
• Length: 371 a.a.
• NCBI ID: WP_208672636.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB6
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1068159..1079274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG88_RS05275 (VZG88_05275)	gor	1068879..1070219 (-)	1341	WP_208679034.1	glutathione-disulfide reductase	-
VZG88_RS05280 (VZG88_05280)	-	1070318..1070749 (-)	432	WP_208679033.1	hypothetical protein	-
VZG88_RS05285 (VZG88_05285)	-	1070913..1071623 (-)	711	WP_208672632.1	PHP domain-containing protein	-
VZG88_RS05290 (VZG88_05290)	-	1072301..1073116 (-)	816	WP_338438639.1	D-hexose-6-phosphate mutarotase	-
VZG88_RS05295 (VZG88_05295)	pilT	1073159..1074274 (-)	1116	WP_208672636.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
VZG88_RS05300 (VZG88_05300)	uvrA	1074441..1077452 (-)	3012	WP_208679032.1	excinuclease ABC subunit UvrA	Machinery gene
VZG88_RS05305 (VZG88_05305)	-	1077579..1077740 (+)	162	WP_208672638.1	hypothetical protein	-
VZG88_RS05310 (VZG88_05310)	-	1077814..1078392 (-)	579	WP_228383277.1	GAF domain-containing protein	-
VZG88_RS05315 (VZG88_05315)	-	1078609..1078827 (+)	219	WP_208672641.1	chlorophyll a/b-binding protein	-

Sequence

Protein

• Length: 371 a.a.
• Molecular weight: 41480.80 Da
• Isoelectric Point: 5.4458

>NTDB_id=844573 VZG88_RS05295 WP_208672636.1 1073159..1074274(-) (pilT) [Synechococcus elongatus IITB6]
MTAPTIEQLVRKACQVQASDIHLRVGHPPYFRLREQMYPLPKAPAVTESDMDSWLNEILTPAQRTRLQETQEIDEALFYP
NLIRCRVVCFQTLDGTAITLRLIPLQIPSLFELQLPSVLSGLVQRKQGLILVTGPTGSGKSTTLAAMVNEMNQTMARHII
TIEDPIEYVFEPVRCLITQREIGRHAHDFASALRAALRADPDVILVGEIRDQKTLKTAIYAAQTGHLVLGTLHARNTVST
IDRLIGLDGMVQSSDTRKQFLELLVAVISQQLITPQTGSRRAILEVLINTPAIQDYLNRGELEEAYRLMELDTIEGMQTL
NEALLIEIEQGRLSVEEALKVSIDPGDLDRRLRITGIAQAQGFSSHFQSDF

Nucleotide

• Length: 1116 bp

>NTDB_id=844573 VZG88_RS05295 WP_208672636.1 1073159..1074274(-) (pilT) [Synechococcus elongatus IITB6]
ATGACAGCGCCCACCATTGAGCAACTTGTGCGCAAGGCTTGCCAAGTACAAGCCTCGGATATTCATCTGCGGGTTGGGCA
TCCTCCCTACTTTCGGTTGCGCGAGCAAATGTATCCGCTCCCAAAAGCACCGGCTGTCACAGAGAGTGATATGGATAGCT
GGCTCAATGAAATCTTGACGCCAGCCCAGCGCACTCGTCTTCAAGAAACGCAGGAAATTGATGAAGCGCTTTTTTATCCA
AATCTGATTCGTTGTCGCGTCGTTTGCTTTCAAACACTGGATGGTACAGCGATTACGCTACGGTTAATCCCTCTACAGAT
TCCGAGTCTCTTTGAGCTGCAACTTCCATCTGTGCTTTCGGGGTTAGTTCAACGGAAACAAGGACTGATTTTAGTCACGG
GACCAACAGGATCAGGTAAGTCAACCACCCTAGCAGCCATGGTTAATGAAATGAACCAAACTATGGCTCGCCATATTATT
ACTATCGAAGACCCTATTGAGTATGTTTTTGAACCTGTTCGCTGTTTGATTACCCAACGTGAAATTGGTCGTCATGCCCA
TGATTTTGCCTCGGCACTGCGGGCTGCGCTACGGGCTGATCCAGATGTCATTCTTGTGGGTGAGATTCGAGATCAAAAGA
CGCTCAAGACAGCTATCTATGCTGCCCAAACGGGTCACCTTGTTTTGGGGACACTCCATGCTCGCAATACAGTCAGCACG
ATCGATCGCTTGATTGGTCTTGATGGCATGGTGCAGAGCTCAGACACGCGCAAGCAGTTCCTTGAGCTGTTAGTCGCAGT
GATTTCCCAACAACTGATCACTCCCCAAACTGGTAGTCGTAGGGCAATCTTAGAAGTTTTGATCAATACGCCGGCGATTC
AGGACTATCTCAACCGTGGCGAATTAGAGGAAGCCTATCGCTTGATGGAACTCGACACGATTGAGGGCATGCAAACTCTC
AATGAGGCACTCCTGATCGAGATTGAGCAAGGTCGACTCAGTGTTGAAGAGGCTCTGAAAGTCTCGATTGATCCTGGAGA
TCTTGATCGCCGGCTGCGGATTACTGGGATTGCTCAAGCCCAAGGATTTTCCAGTCATTTTCAATCTGATTTCTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (9-273)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	42.771	89.488	0.383
pilT	Vibrio cholerae strain A1552	42.771	89.488	0.383
pilU	Acinetobacter baylyi ADP1	40.173	93.261	0.375
pilT	Acinetobacter baylyi ADP1	40.588	91.644	0.372