Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QRO24_RS11260 Genome accession   NZ_CP127829
Coordinates   2351117..2352655 (-) Length   512 a.a.
NCBI ID   WP_409025753.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2346117..2357655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS11260 (QRO24_11205) comM 2351117..2352655 (-) 1539 WP_409025753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QRO24_RS11265 (QRO24_11210) lipA 2352800..2353762 (-) 963 WP_039085866.1 lipoyl synthase -
  QRO24_RS11270 (QRO24_11215) lipB 2353772..2354482 (-) 711 WP_407902540.1 lipoyl(octanoyl) transferase LipB -
  QRO24_RS11275 (QRO24_11220) ybeD 2354496..2354771 (-) 276 WP_335795052.1 DUF493 family protein YbeD -
  QRO24_RS11280 (QRO24_11225) - 2354909..2356093 (-) 1185 WP_013746144.1 serine hydrolase -
  QRO24_RS11285 (QRO24_11230) - 2356116..2356952 (-) 837 WP_409025754.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56294.90 Da        Isoelectric Point: 9.5181

>NTDB_id=844380 QRO24_RS11260 WP_409025753.1 2351117..2352655(-) (comM) [Gallibacterium anatis strain OH/Ck/12965/20]
MSLAVVYSRASIGVQAPLITIEVHMSNGAPGLTLVGLPETTVKEARDRVRSALINANFVYPTQRITINLAPADLPKEGGR
FDLPIALGILAASGQIDAKRLQSFEFVGELALTGNLRGVQGVIPAILAANNAKRELIIAKQNAQEATLVANTQTYFADSL
LDVVSFLNQQQNLPIAQQLPPLSHSENTHLLDMTDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
TEQEAIETAAINSLVQHRLDYHYWKQRPFRSPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALREP
LESGEIVISRTAAKVTFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENNSEKLKHIVIQARKKQLSRCGKINAHLSGKEIEKYCKLIQDDAIFLENALNKLGLSVRAYHRILRVSRTIADLAGE
EQIQRIHLAEALGYRAMDRLLQRLTANINNTI

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=844380 QRO24_RS11260 WP_409025753.1 2351117..2352655(-) (comM) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGTCATTAGCAGTTGTTTACAGCCGTGCCTCTATCGGCGTACAAGCACCATTAATCACAATTGAAGTCCATATGAGTAA
CGGCGCACCGGGGTTAACCTTGGTCGGCTTACCGGAAACCACCGTAAAAGAAGCAAGAGATCGTGTTCGCAGTGCCTTAA
TCAATGCTAATTTTGTCTATCCGACACAACGCATTACCATCAATCTTGCACCGGCGGATCTGCCGAAAGAGGGCGGACGC
TTTGATCTTCCCATCGCCTTAGGCATTTTGGCGGCTTCCGGGCAAATTGACGCTAAGCGGTTACAATCTTTCGAATTTGT
CGGTGAACTGGCACTTACCGGAAATTTACGTGGCGTACAAGGCGTTATTCCGGCTATTTTGGCGGCGAATAACGCAAAAC
GTGAATTAATTATTGCTAAACAGAACGCACAAGAAGCAACCTTAGTTGCCAACACACAAACCTATTTTGCCGACTCGCTA
TTAGATGTTGTCAGTTTTTTGAATCAACAACAAAATTTGCCGATAGCACAACAATTACCGCCACTATCCCATTCTGAAAA
CACACATTTATTGGATATGACGGATATTATCGGGCAACAACACGCTAAACGAGCTTTACTCATTGCTGCTGCCGGACAGC
ATAATCTCCTCTTTTTAGGGCCGCCCGGCACCGGTAAAACAATGCTGGCGAGTCGTTTAACCACTTTGTTACCGGAAATG
ACGGAACAGGAAGCAATTGAAACCGCTGCAATTAACAGTCTGGTTCAACATCGTTTGGATTATCATTATTGGAAACAACG
CCCTTTTCGCTCACCACATCACAGTGCCTCAATGGCGGCGTTAGTTGGTGGTGGCACTATTCCTAAACCGGGAGAAATTT
CCCTTGCCCATAATGGCGTGCTTTTTTTGGACGAATTGCCTGAGTTTGATCGCAAAGTGCTTGACGCCTTACGAGAACCG
CTGGAAAGTGGCGAAATCGTGATCTCACGTACAGCGGCAAAAGTGACTTTTCCAGCAAAATTTCAACTGATCGCTGCAAT
GAACCCTAGCCCAACAGGGCATTATCAAGGCACACATAACCGCACCTCGCCACAACAGATTATGCGCTACCTTAATCGAT
TATCCGGACCTTTTCTTGACCGATTTGATCTCTCAATTGAAGTGCCATTACTCCCACAAGGTACTTTGCAACAATTACCT
AAAGACGAAAACAACAGTGAAAAATTAAAACATATCGTGATACAGGCGAGGAAAAAACAACTCTCTCGTTGCGGAAAAAT
TAATGCCCATTTATCTGGCAAAGAGATCGAAAAATATTGCAAATTAATACAAGATGATGCCATTTTTCTTGAAAATGCAT
TGAATAAACTTGGGCTTTCTGTTAGAGCCTATCATCGCATTTTACGAGTTTCCCGCACCATCGCCGATCTGGCAGGTGAA
GAACAAATCCAACGCATTCATCTAGCTGAAGCACTAGGTTATCGTGCTATGGACAGGTTATTACAGCGTTTAACCGCTAA
TATCAATAACACCATTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

75.74

99.023

0.75
  comM Glaesserella parasuis strain SC1401

75.74

99.023

0.75
  comM Vibrio cholerae strain A1552

65.02

98.828

0.643
  comM Vibrio campbellii strain DS40M4

64.032

98.828

0.633
  comM Legionella pneumophila str. Paris

51.195

98.047

0.502
  comM Legionella pneumophila strain ERS1305867

51.195

98.047

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.199

100

0.463