Detailed information NTG0844106

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QP482_RS04905
• Genome accession: NZ_CP127406
• Coordinates: 1057058..1058221 (+)
• Length: 387 a.a.
• NCBI ID: WP_049467229.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. As-14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1052058..1063221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP482_RS04875	soxR	1052234..1052668 (+)	435	WP_032951587.1	redox-sensitive transcriptional activator SoxR	-
QP482_RS04880	-	1052706..1053308 (-)	603	WP_205405056.1	short chain dehydrogenase	-
QP482_RS04885	-	1053407..1054282 (+)	876	WP_180163775.1	LysR family transcriptional regulator	-
QP482_RS04890	proC	1054338..1055159 (-)	822	WP_205405055.1	pyrroline-5-carboxylate reductase	-
QP482_RS04895	-	1055176..1055853 (-)	678	WP_205405054.1	YggS family pyridoxal phosphate-dependent enzyme	-
QP482_RS04900	pilT	1055941..1056978 (+)	1038	WP_004147099.1	type IV pilus twitching motility protein PilT	Machinery gene
QP482_RS04905	pilU	1057058..1058221 (+)	1164	WP_049467229.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QP482_RS04910	-	1058364..1059347 (+)	984	WP_099819251.1	aldo/keto reductase	-
QP482_RS04915	-	1059421..1060320 (-)	900	WP_205405053.1	LysR family transcriptional regulator	-
QP482_RS04920	-	1060728..1060940 (+)	213	WP_033830520.1	DUF4287 domain-containing protein	-
QP482_RS04925	-	1061267..1061974 (+)	708	WP_099819252.1	YitT family protein	-
QP482_RS04930	-	1062008..1062553 (-)	546	WP_205405052.1	DNA-3-methyladenine glycosylase I	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 43182.62 Da
• Isoelectric Point: 6.6616

>NTDB_id=844106 QP482_RS04905 WP_049467229.1 1057058..1058221(+) (pilU) [Stenotrophomonas sp. As-14]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR

Nucleotide

• Length: 1164 bp

>NTDB_id=844106 QP482_RS04905 WP_049467229.1 1057058..1058221(+) (pilU) [Stenotrophomonas sp. As-14]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACTTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACCGCTGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATCTCGCCGATCACCCAGA
CTCCGCTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGCTTCCGTGTGAGCTGTTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATCCCGACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCCACGTCGCTGGCCGCGATGATCGGCTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCCCCGGACGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACCCTGCACGCCAACAATGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGCT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCGTCGCCGGATGGCCGCTCGCGCAAGGTCG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGTTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGCTGGATGGGGTGGAGATTTCCGAGGTCCGGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (129-283)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.575	94.832	0.641
pilU	Acinetobacter baylyi ADP1	64.146	92.248	0.592
pilU	Vibrio cholerae strain A1552	53.371	91.99	0.491
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.817	91.731	0.393