Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QP436_RS08855 Genome accession   NZ_CP127404
Coordinates   1992367..1993425 (-) Length   352 a.a.
NCBI ID   WP_032951624.1    Uniprot ID   A0AA46AYB7
Organism   Stenotrophomonas sp. As-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1987367..1998425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP436_RS08835 - 1988281..1990263 (-) 1983 WP_205406301.1 type IV pilus secretin PilQ family protein -
  QP436_RS08840 - 1990285..1990821 (-) 537 WP_170919634.1 pilus assembly protein PilP -
  QP436_RS08845 pilO 1990818..1991474 (-) 657 WP_100553441.1 type 4a pilus biogenesis protein PilO -
  QP436_RS08850 - 1991471..1992367 (-) 897 WP_205406300.1 PilN domain-containing protein -
  QP436_RS08855 pilM 1992367..1993425 (-) 1059 WP_032951624.1 pilus assembly protein PilM Machinery gene
  QP436_RS08860 - 1993643..1996069 (+) 2427 WP_205406299.1 penicillin-binding protein 1A -
  QP436_RS08865 - 1996797..1997441 (+) 645 WP_089236654.1 hypothetical protein -
  QP436_RS08870 - 1997518..1998255 (-) 738 WP_205405164.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37695.33 Da        Isoelectric Point: 4.4047

>NTDB_id=844074 QP436_RS08855 WP_032951624.1 1992367..1993425(-) (pilM) [Stenotrophomonas sp. As-6]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAFALVASELPVSAEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=844074 QP436_RS08855 WP_032951624.1 1992367..1993425(-) (pilM) [Stenotrophomonas sp. As-6]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGCGGCAACCGTTTCCGTGTGGAACATTACGCCGTGGAACCGCTGCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TCGAAGTGGAGGCCGTGGGAGAGGCCATCCGCCGGGCGATGAACCGTTCCGGCAGCAAGGCCAAGCTGGCCGCTGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAAAACGTTGAACTGCGCCAGTCGGCACTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTGGCCAGCGAGCTGCCGGT
TTCGGCCGAGGGCGTAGTTGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTACTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTACGAGGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAATTCTTCTATGCCGGCAGCGAATTCAACCGGGTCGATCACATCGTGCTGGCCGGCG
GCTGTGCTGCCCTTGCAGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGTGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGGCCGAAGGTGCAGGCGCACGCGCTGGCCCAGGACGCCCCCGCGCTGATGATCGCGACCGGTCTGGC
GCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.989

100

0.52
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472