Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QRA07_RS00065 Genome accession   NZ_CP127321
Coordinates   12550..13683 (+) Length   377 a.a.
NCBI ID   WP_233735092.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 7550..18683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS00040 (QRA07_00040) - 7810..8016 (-) 207 WP_005072046.1 hypothetical protein -
  QRA07_RS00045 (QRA07_00045) oprC 8066..10180 (-) 2115 WP_233735090.1 TonB-dependent copper receptor -
  QRA07_RS00050 (QRA07_00050) - 10253..10678 (-) 426 WP_017399716.1 DUF2946 family protein -
  QRA07_RS00055 (QRA07_00055) def 10722..11252 (-) 531 WP_002114101.1 peptide deformylase -
  QRA07_RS00060 (QRA07_00060) tsaP 11375..12529 (+) 1155 WP_202733407.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QRA07_RS00065 (QRA07_00065) dprA 12550..13683 (+) 1134 WP_233735092.1 DNA-processing protein DprA Machinery gene
  QRA07_RS00070 (QRA07_00070) yrdC 13735..14304 (+) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  QRA07_RS00075 (QRA07_00075) - 14697..15617 (-) 921 WP_233735094.1 DMT family transporter -
  QRA07_RS00080 (QRA07_00080) - 15722..16375 (-) 654 WP_233735096.1 TetR/AcrR family transcriptional regulator -
  QRA07_RS00085 (QRA07_00085) nepI 16511..17725 (+) 1215 WP_233735098.1 MFS transporter -
  QRA07_RS00090 (QRA07_00090) yeaM 17747..18511 (+) 765 WP_233735100.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41928.49 Da        Isoelectric Point: 6.4498

>NTDB_id=843386 QRA07_RS00065 WP_233735092.1 12550..13683(+) (dprA) [Acinetobacter pittii strain PC870]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLVLPTQWQSQQQNSTEEAIVSSTPEI
PEYLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=843386 QRA07_RS00065 WP_233735092.1 12550..13683(+) (dprA) [Acinetobacter pittii strain PC870]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAATTACTACCTTATACAGATTACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTCGGTAGTCGAAAACCAAGCCCCC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGT
ATTGATGAAGCTGCACATCAAGGAGCTTCAGCTCATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTAGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACA
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGTTTTACCTACTCAATGGCAAAGTCAGCAACAAAATTCCACCGAGGAGGCTATAGTTTCTAGTACCCCAGAAATT
CCTGAGTATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.451

100

0.905

  dprA Acinetobacter baumannii strain A118

89.92

100

0.899

  dprA Acinetobacter baylyi ADP1

70.866

100

0.716

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387