Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QRA07_RS00060 Genome accession   NZ_CP127321
Coordinates   11375..12529 (+) Length   384 a.a.
NCBI ID   WP_202733407.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6375..17529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS00035 (QRA07_00035) - 6527..7741 (+) 1215 WP_233735088.1 oxygenase MpaB family protein -
  QRA07_RS00040 (QRA07_00040) - 7810..8016 (-) 207 WP_005072046.1 hypothetical protein -
  QRA07_RS00045 (QRA07_00045) oprC 8066..10180 (-) 2115 WP_233735090.1 TonB-dependent copper receptor -
  QRA07_RS00050 (QRA07_00050) - 10253..10678 (-) 426 WP_017399716.1 DUF2946 family protein -
  QRA07_RS00055 (QRA07_00055) def 10722..11252 (-) 531 WP_002114101.1 peptide deformylase -
  QRA07_RS00060 (QRA07_00060) tsaP 11375..12529 (+) 1155 WP_202733407.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QRA07_RS00065 (QRA07_00065) dprA 12550..13683 (+) 1134 WP_233735092.1 DNA-processing protein DprA Machinery gene
  QRA07_RS00070 (QRA07_00070) yrdC 13735..14304 (+) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  QRA07_RS00075 (QRA07_00075) - 14697..15617 (-) 921 WP_233735094.1 DMT family transporter -
  QRA07_RS00080 (QRA07_00080) - 15722..16375 (-) 654 WP_233735096.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42656.51 Da        Isoelectric Point: 7.0717

>NTDB_id=843385 QRA07_RS00060 WP_202733407.1 11375..12529(+) (tsaP) [Acinetobacter pittii strain PC870]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVAETYAASPNHNPPSLRSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=843385 QRA07_RS00060 WP_202733407.1 11375..12529(+) (tsaP) [Acinetobacter pittii strain PC870]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACGTTGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCAGGTGATCGATTACTGTTATGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGCTACACAGGTCAAATGACAAATT
TGCAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAACATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACATACTCCATATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGTCAGACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACATTACCTACTTTGTTTTATCCGGTGGATGCCACTCAGGTGACGGACGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCAAAAATAGTGTGGTGACTTTAGATCGCGGTACGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACACAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTGATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.844

100

0.898