Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QO259_RS19625 Genome accession   NZ_CP127244
Coordinates   4300718..4302238 (+) Length   506 a.a.
NCBI ID   WP_285951278.1    Uniprot ID   A0A9Y2G699
Organism   Salinicola sp. JS01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4295718..4307238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QO259_RS19600 (QO259_19600) - 4296763..4297539 (+) 777 WP_035476359.1 ferredoxin--NADP reductase -
  QO259_RS19605 (QO259_19605) glnK 4297659..4297997 (-) 339 WP_035476361.1 P-II family nitrogen regulator -
  QO259_RS19610 (QO259_19610) - 4298278..4299528 (-) 1251 WP_207036327.1 ammonium transporter -
  QO259_RS19615 (QO259_19615) - 4299557..4299895 (-) 339 WP_035476366.1 P-II family nitrogen regulator -
  QO259_RS19620 (QO259_19620) - 4300181..4300498 (+) 318 WP_035476369.1 accessory factor UbiK family protein -
  QO259_RS19625 (QO259_19625) comM 4300718..4302238 (+) 1521 WP_285951278.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QO259_RS19630 (QO259_19630) rhtB 4302330..4302956 (+) 627 WP_285951279.1 homoserine/homoserine lactone efflux protein -
  QO259_RS19635 (QO259_19635) - 4303099..4303749 (+) 651 WP_285951280.1 LysE family translocator -
  QO259_RS19640 (QO259_19640) - 4303913..4305034 (-) 1122 WP_285951281.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  QO259_RS19645 (QO259_19645) - 4305075..4305593 (-) 519 WP_285951282.1 hypothetical protein -
  QO259_RS19650 (QO259_19650) - 4305590..4306606 (-) 1017 WP_207036315.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54167.36 Da        Isoelectric Point: 8.2968

>NTDB_id=843047 QO259_RS19625 WP_285951278.1 4300718..4302238(+) (comM) [Salinicola sp. JS01]
MTLAIVRTRASLGLEAPQVLIEVHLSNGLPGVTLVGLPETAVRESRERVRSALLTAGFEFPTRRITLNLAPADLPKDGGR
FDLPIALGILMASGQIPVEAAQQLEVVGELALDGTLRPVTGVLPTALAARAAGRGLIVPAANADEAALAEGGEVFAAGHL
LAVVGHLLGRERLAAHQLGTPPRAEMVQPDMADVKGQHQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLASILPPLSS
DEALEVAAVRSVCGLSIMDRWGQRPFRNPHHTSSSVALVGGGSKPRPGEISLAHHGVLFLDELPEFDRHVLEVLREPLES
AQILISRANHQRRFPARFQLVAAMNPCPCGHLGDPRQRCHCSPAQIQRYQSRLSGPLLDRIDLQVEVPALPATQLSDQTP
GESSASVRQRVLAARERQRARGWLNAQLPGPELEAACALSVAEREWFAGVLDRLKLSARAYHRVLRVALTLTDLGEEPRV
GRAQLMEAIGYRQLDRLLNAGDPLRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=843047 QO259_RS19625 WP_285951278.1 4300718..4302238(+) (comM) [Salinicola sp. JS01]
ATGACCCTAGCCATCGTGCGCACGCGCGCCAGCCTCGGGCTGGAGGCGCCGCAAGTGCTGATCGAAGTGCACCTCAGCAA
CGGCCTGCCGGGGGTGACCCTGGTGGGGCTGCCGGAGACCGCCGTGCGCGAGAGCCGGGAGCGGGTGCGCAGCGCGCTGC
TCACCGCCGGTTTCGAGTTCCCCACCCGGCGTATCACCCTCAATCTGGCGCCCGCCGACCTGCCCAAGGATGGCGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTGATGGCCTCCGGTCAGATACCGGTGGAGGCGGCCCAGCAGCTCGAAGTGGT
CGGCGAACTGGCGCTGGATGGCACGCTGCGCCCGGTCACGGGTGTACTGCCGACGGCGCTGGCCGCACGGGCCGCCGGGC
GGGGGCTGATCGTGCCCGCGGCCAATGCCGATGAGGCGGCCCTGGCCGAGGGGGGCGAGGTGTTCGCGGCGGGGCATTTG
CTGGCGGTGGTGGGGCATCTGCTGGGCCGTGAGCGGCTCGCGGCGCACCAACTTGGGACACCGCCGCGCGCCGAGATGGT
TCAGCCCGACATGGCCGACGTCAAAGGTCAGCACCAGGCGCGCCGGGCGCTGGAAGTGGCCGCAGCCGGCGGGCACAACC
TGCTGCTGGCGGGTCCGCCGGGTACCGGCAAGACCATGCTGGCGAGCCGCCTGGCCAGCATCCTGCCGCCGCTGAGCAGT
GACGAGGCGCTGGAGGTGGCGGCGGTGCGCTCGGTGTGCGGGCTCTCGATCATGGACCGCTGGGGCCAGCGCCCGTTTCG
CAACCCGCACCATACCTCGAGCAGCGTGGCGCTGGTGGGCGGTGGCTCCAAGCCCCGCCCTGGGGAAATCTCGCTGGCGC
ACCACGGCGTGCTGTTCCTGGACGAGCTGCCCGAGTTCGACCGCCATGTGCTGGAGGTGCTGCGCGAACCGCTGGAATCG
GCCCAGATCCTGATCTCGCGGGCCAATCACCAGCGCCGTTTTCCGGCCCGCTTCCAACTGGTGGCGGCGATGAACCCGTG
CCCCTGTGGCCACCTTGGCGATCCGCGCCAGCGCTGCCACTGCAGTCCGGCGCAGATCCAGCGCTATCAGTCGCGCCTCT
CCGGGCCGCTGCTCGATCGTATCGATCTGCAGGTGGAAGTCCCGGCGCTGCCGGCTACCCAGTTGTCCGATCAGACCCCG
GGCGAGTCCTCGGCCAGCGTGCGTCAGCGGGTGCTGGCGGCGCGCGAGCGTCAGCGCGCCCGCGGCTGGCTCAACGCCCA
GCTGCCCGGCCCGGAGCTGGAAGCCGCCTGTGCCCTCAGCGTGGCCGAGCGCGAGTGGTTCGCCGGCGTGCTGGATCGGC
TCAAGCTCTCGGCCCGCGCCTACCACCGGGTGCTGCGGGTCGCCCTGACCCTGACCGATCTGGGCGAGGAGCCACGGGTC
GGGCGAGCCCAACTGATGGAAGCGATCGGCTATCGCCAGCTCGACCGGCTGCTCAATGCCGGCGATCCGCTGCGGGGCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.262

99.407

0.559
  comM Vibrio campbellii strain DS40M4

55.952

99.605

0.557
  comM Haemophilus influenzae Rd KW20

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

54.455

99.802

0.543
  comM Legionella pneumophila str. Paris

50.395

100

0.504
  comM Legionella pneumophila strain ERS1305867

50.395

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.096

98.617

0.474