NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	QQX03_RS10945	Genome accession	NZ_CP127221
Coordinates	2188347..2188844 (-)	Length	165 a.a.
NCBI ID	WP_285975755.1	Uniprot ID	A0A9Y2F4X3
Organism	Altererythrobacter rubellus strain NBRC 112769
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2183347..2193844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQX03_RS10910 (QQX03_10910)	-	2183535..2183945 (-)	411	WP_285975749.1	ACT domain-containing protein	-
QQX03_RS10915 (QQX03_10915)	hslU	2183945..2185246 (-)	1302	WP_285975750.1	ATP-dependent protease ATPase subunit HslU	-
QQX03_RS10920 (QQX03_10920)	hslV	2185252..2185812 (-)	561	WP_285975751.1	ATP-dependent protease subunit HslV	-
QQX03_RS10925 (QQX03_10925)	bamE	2185870..2186331 (-)	462	WP_285977013.1	outer membrane protein assembly factor BamE	-
QQX03_RS10930 (QQX03_10930)	-	2186513..2187040 (+)	528	WP_285975752.1	ubiquinol-cytochrome C chaperone family protein	-
QQX03_RS10935 (QQX03_10935)	-	2187037..2187564 (+)	528	WP_285975753.1	YceD family protein	-
QQX03_RS10940 (QQX03_10940)	-	2187638..2188327 (+)	690	WP_285975754.1	hypothetical protein	-
QQX03_RS10945 (QQX03_10945)	ssb	2188347..2188844 (-)	498	WP_285975755.1	single-stranded DNA-binding protein	Machinery gene
QQX03_RS10950 (QQX03_10950)	-	2188943..2189602 (-)	660	WP_285975756.1	COQ9 family protein	-
QQX03_RS10955 (QQX03_10955)	-	2189619..2190239 (-)	621	WP_285975757.1	ankyrin repeat domain-containing protein	-
QQX03_RS10960 (QQX03_10960)	-	2190427..2190930 (+)	504	WP_349665842.1	SCO family protein	-
QQX03_RS10965 (QQX03_10965)	-	2190918..2191361 (+)	444	WP_285975758.1	YcgN family cysteine cluster protein	-
QQX03_RS10970 (QQX03_10970)	-	2191358..2192080 (+)	723	WP_285975759.1	YgjP-like metallopeptidase domain-containing protein	-
QQX03_RS10975 (QQX03_10975)	-	2192127..2192603 (+)	477	WP_285975760.1	hypothetical protein	-
QQX03_RS10980 (QQX03_10980)	ribD	2192628..2193569 (+)	942	WP_285977015.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

Download Length: 165 a.a. Molecular weight: 17385.94 Da Isoelectric Point: 4.9367

                                >NTDB_id=842699 QQX03_RS10945 WP_285975755.1 2188347..2188844(-) (ssb) [Altererythrobacter rubellus strain NBRC 112769]

MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSETWKDRSTGERQERTEWHTVAIFSEGLINVVENYLKKGSKVYV

EGQLQTRKWQDQQGNDRYSTEVVLRGYNGTLTMLDGAGGNRSSGGGYGGGQSGGGFGGGNQGGGSGVQGAGGGSNYDDLD

DDIPF

Nucleotide

Download Length: 498 bp

                                >NTDB_id=842699 QQX03_RS10945 WP_285975755.1 2188347..2188844(-) (ssb) [Altererythrobacter rubellus strain NBRC 112769]

ATGGCGGGCTCGCTCAACAAGGTAATGCTGATCGGAAATCTCGGGGCTGATCCGGAAATTCGCAGCTTCCAGAATGGCGG

AAAGGTCGCCAATCTGCGCATCGCCACTAGCGAGACGTGGAAAGATCGCAGCACTGGCGAACGGCAGGAACGTACCGAGT

GGCACACTGTCGCGATTTTCTCCGAAGGCCTCATCAATGTGGTGGAGAATTACCTCAAGAAGGGCAGCAAGGTCTATGTC

GAAGGCCAGCTTCAGACCCGGAAGTGGCAGGATCAGCAGGGCAATGACCGCTACAGCACTGAAGTGGTGCTGCGCGGATA

CAATGGTACCCTGACCATGCTCGACGGTGCTGGCGGCAATCGCTCAAGCGGTGGTGGCTATGGCGGAGGCCAGAGCGGCG

GCGGCTTCGGCGGCGGCAACCAGGGCGGCGGCTCAGGCGTTCAGGGCGCTGGCGGTGGTTCCAACTATGACGATTTGGAC

GACGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Vibrio cholerae strain A1552	50.289	100	0.527
ssb	Glaesserella parasuis strain SC1401	45.263	100	0.521
ssb	Neisseria gonorrhoeae MS11	39.444	100	0.43
ssb	Neisseria meningitidis MC58	39.444	100	0.43
ssbA	Bacillus subtilis subsp. subtilis str. 168	36.313	100	0.394

Detailed information NTG0842699