Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   COW1_RS14045 Genome accession   NZ_AP024239
Coordinates   2964161..2964517 (+) Length   118 a.a.
NCBI ID   WP_096367643.1    Uniprot ID   -
Organism   Thiohalobacter sp. COW1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2959161..2969517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COW1_RS14020 (TspCOW1_27870) - 2959618..2960166 (-) 549 WP_201344529.1 Gx transporter family protein -
  COW1_RS14025 (TspCOW1_27880) - 2960170..2960535 (-) 366 WP_201344530.1 NusG domain II-containing protein -
  COW1_RS14030 (TspCOW1_27890) - 2960535..2961581 (-) 1047 WP_201344531.1 FAD:protein FMN transferase -
  COW1_RS14035 (TspCOW1_27900) gshB 2961571..2962521 (-) 951 WP_201344532.1 glutathione synthase -
  COW1_RS14040 (TspCOW1_27910) gshA 2962518..2963846 (-) 1329 WP_201344533.1 glutamate--cysteine ligase -
  COW1_RS14045 (TspCOW1_27920) pilG 2964161..2964517 (+) 357 WP_096367643.1 PleD family two-component system response regulator Regulator
  COW1_RS14050 (TspCOW1_27930) pilH 2964682..2965047 (+) 366 WP_096367352.1 twitching motility response regulator PilH -
  COW1_RS14055 (TspCOW1_27940) - 2965074..2965622 (+) 549 WP_201344534.1 chemotaxis protein CheW -
  COW1_RS14060 (TspCOW1_27950) - 2965712..2967733 (+) 2022 WP_201344535.1 methyl-accepting chemotaxis protein -
  COW1_RS14065 (TspCOW1_27960) - 2967776..2968657 (+) 882 WP_201344536.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13165.28 Da        Isoelectric Point: 7.8834

>NTDB_id=84251 COW1_RS14045 WP_096367643.1 2964161..2964517(+) (pilG) [Thiohalobacter sp. COW1]
MVIDDSKTIRRTAETLLKKAGCEVITATDGFEALSKIADHKPDIIFVDIMMPRLDGYQTCALIKHNQAFKGTPVIMLSSK
DGLFDRARGRIVGSEQYVTKPFSKEELLGAIRDHVVRD

Nucleotide


Download         Length: 357 bp        

>NTDB_id=84251 COW1_RS14045 WP_096367643.1 2964161..2964517(+) (pilG) [Thiohalobacter sp. COW1]
ATGGTGATTGACGACAGCAAGACCATCCGCCGCACCGCCGAGACCCTTCTCAAGAAAGCCGGTTGCGAGGTCATCACGGC
CACCGACGGCTTCGAGGCCCTTTCCAAGATCGCCGATCACAAGCCCGATATCATTTTCGTCGACATCATGATGCCGCGCC
TTGACGGCTATCAGACCTGTGCCCTGATCAAGCACAACCAGGCCTTCAAGGGCACGCCCGTGATCATGCTTTCCAGCAAG
GACGGCCTGTTCGACCGGGCACGGGGCCGGATCGTGGGATCGGAGCAGTATGTCACCAAGCCCTTTTCCAAGGAGGAACT
GCTGGGTGCGATCCGGGACCACGTCGTCCGCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

79.13

97.458

0.771
  vicR Streptococcus mutans UA159

42.735

99.153

0.424
  pilH Synechocystis sp. PCC 6803

41.964

94.915

0.398
  chpA Acinetobacter baumannii strain A118

40.541

94.068

0.381
  micA Streptococcus pneumoniae Cp1015

38.393

94.915

0.364

Multiple sequence alignment