Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   COW1_RS12385 Genome accession   NZ_AP024239
Coordinates   2628883..2630388 (-) Length   501 a.a.
NCBI ID   WP_096363995.1    Uniprot ID   A0A1Z4VMG5
Organism   Thiohalobacter sp. COW1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2623883..2635388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COW1_RS12355 (TspCOW1_24530) - 2625565..2625885 (+) 321 WP_201344370.1 helix-turn-helix transcriptional regulator -
  COW1_RS12360 (TspCOW1_24540) - 2625963..2626391 (+) 429 WP_096364005.1 rhodanese-like domain-containing protein -
  COW1_RS12365 (TspCOW1_24550) grxC 2626398..2626655 (+) 258 WP_096364003.1 glutaredoxin 3 -
  COW1_RS12370 (TspCOW1_24560) secB 2626763..2627233 (+) 471 WP_096364001.1 protein-export chaperone SecB -
  COW1_RS12375 (TspCOW1_24570) - 2627252..2628253 (+) 1002 WP_096363999.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  COW1_RS12380 (TspCOW1_24580) - 2628295..2628723 (-) 429 WP_096363997.1 tetratricopeptide repeat protein -
  COW1_RS12385 (TspCOW1_24590) comM 2628883..2630388 (-) 1506 WP_096363995.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  COW1_RS12390 (TspCOW1_24600) - 2630593..2630895 (-) 303 WP_096363993.1 accessory factor UbiK family protein -
  COW1_RS12395 (TspCOW1_24610) glnK 2631235..2631573 (+) 339 WP_096363991.1 P-II family nitrogen regulator -
  COW1_RS12400 (TspCOW1_24620) - 2631615..2632874 (+) 1260 WP_096363989.1 ammonium transporter -
  COW1_RS12405 (TspCOW1_24630) - 2632996..2633715 (+) 720 WP_096363987.1 TorF family putative porin -
  COW1_RS12410 (TspCOW1_24640) - 2633992..2634567 (+) 576 WP_096363985.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53452.41 Da        Isoelectric Point: 8.1925

>NTDB_id=84245 COW1_RS12385 WP_096363995.1 2628883..2630388(-) (comM) [Thiohalobacter sp. COW1]
MSLAVVYSRAQLGIAAPLVSVEVHLSNGLPGLSIVGLPETAVRESKDRVRAALMNSGFEFPARRITINLAPADLPKEGGR
FDLAIALGILAASRQLPPEPLQDHEFTGELSLSGELRPVTGVLPCALQCRQAGRTLVVPEANAAEAALVADGRALQAGHL
LAVTAYLREDQSLEPARVCAGAAGPDTPLPDLAEVRGQAQARRVLEIAAAGGHSLLMVGPPGTGKTLLAQRLPGILPALD
AAEAVETAALRSICGCRIDPGAWGRRPFRAPHHTASAVALVGGGSNPRPGEISLAHNGVLFLDELAEFERRVLEALREPL
ETGSITISRAARQAEFPARFQLVAAMNPCPCGYHGDPTRACRCSPDQIRRYRGRLSGPLLDRFDLQIEVPRQALDWQSAG
GGEPSAVVRERVLAARAAQQRRAGRVNARLEVRALTRDCDLVPELQRFLQQAIERLDLSARAAHRVLRVARTIADLAGAE
ALALAHLSEALQYRVLDRPLP

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=84245 COW1_RS12385 WP_096363995.1 2628883..2630388(-) (comM) [Thiohalobacter sp. COW1]
ATGTCACTGGCCGTGGTCTACAGCCGCGCCCAGCTGGGGATCGCCGCGCCGCTGGTCAGCGTCGAGGTCCACCTGAGCAA
CGGCCTGCCGGGTCTGTCCATCGTGGGTCTGCCGGAGACGGCGGTGCGCGAGAGCAAGGACCGGGTACGTGCCGCGTTGA
TGAACAGCGGTTTCGAGTTTCCGGCCCGCCGCATCACCATCAACCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGGCGT
TTTGATCTGGCCATCGCGCTGGGCATTCTGGCCGCCTCCCGACAACTTCCCCCTGAGCCGCTGCAGGATCACGAATTCAC
CGGCGAACTGTCACTGTCCGGCGAACTGCGCCCGGTCACCGGCGTGCTGCCCTGTGCCCTGCAGTGCCGGCAGGCCGGGC
GGACCCTGGTCGTGCCCGAGGCCAACGCCGCCGAGGCCGCGCTGGTCGCCGACGGGCGTGCACTGCAGGCGGGCCATCTG
CTGGCGGTGACCGCTTACCTGCGTGAAGATCAGTCATTAGAGCCGGCCCGCGTTTGCGCCGGCGCTGCGGGCCCGGACAC
CCCCTTGCCCGATCTGGCCGAGGTGCGGGGCCAGGCCCAGGCCCGCCGGGTGCTGGAGATCGCTGCCGCCGGCGGTCACA
GTCTGCTGATGGTCGGCCCGCCCGGGACCGGCAAGACCCTGCTGGCCCAGCGCCTGCCCGGCATCCTCCCGGCGCTGGAT
GCGGCCGAGGCGGTGGAGACGGCCGCCTTGCGCTCCATCTGCGGCTGCCGCATCGACCCAGGCGCCTGGGGCCGCCGTCC
CTTCCGGGCCCCGCACCACACTGCCTCGGCCGTGGCCCTGGTCGGCGGCGGATCCAATCCCCGCCCCGGCGAGATTTCGC
TGGCGCACAATGGGGTGTTGTTCCTCGACGAGCTGGCCGAGTTCGAGCGCCGGGTGCTGGAGGCGCTGCGCGAGCCGCTT
GAGACCGGCAGCATCACCATCTCGCGCGCCGCCCGTCAGGCCGAGTTCCCGGCCCGCTTTCAGCTGGTGGCCGCCATGAA
CCCCTGCCCCTGCGGCTACCACGGTGATCCCACCCGGGCCTGCCGCTGCAGCCCGGACCAGATCCGACGTTACCGCGGTC
GCCTGTCCGGGCCGCTGCTGGACCGCTTCGATCTGCAGATCGAGGTGCCGCGCCAGGCGCTGGACTGGCAGAGCGCCGGC
GGCGGCGAACCCAGCGCGGTGGTGCGGGAGCGGGTGCTGGCGGCGCGCGCAGCTCAGCAGCGTCGCGCGGGTCGGGTCAA
CGCCCGCCTGGAGGTGCGCGCCCTGACGCGGGACTGCGACCTCGTGCCGGAGCTGCAGCGCTTCCTGCAGCAGGCGATCG
AGCGTCTGGATCTGTCCGCCCGCGCCGCCCACCGGGTGCTGCGGGTGGCGCGCACCATCGCCGATCTGGCTGGCGCCGAG
GCGCTGGCGCTGGCGCATCTGAGCGAAGCACTGCAGTACCGTGTCCTCGACCGGCCGCTGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z4VMG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.534

100

0.561
  comM Vibrio cholerae strain A1552

55.578

100

0.557
  comM Haemophilus influenzae Rd KW20

54.635

100

0.553
  comM Glaesserella parasuis strain SC1401

54.15

100

0.547
  comM Legionella pneumophila str. Paris

50.898

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.898

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.467

Multiple sequence alignment