Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQS40_RS01780 Genome accession   NZ_CP127167
Coordinates   343080..343547 (-) Length   155 a.a.
NCBI ID   WP_049357843.1    Uniprot ID   A0A1B8QYE6
Organism   Haemophilus parainfluenzae strain HP01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 338080..348547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS01760 - 338498..339292 (-) 795 WP_289902171.1 formate/nitrite transporter family protein -
  QQS40_RS01765 - 339512..340102 (-) 591 WP_197542481.1 hypothetical protein -
  QQS40_RS01770 - 340972..341427 (+) 456 WP_005612095.1 DUF411 domain-containing protein -
  QQS40_RS01775 - 341439..342986 (+) 1548 WP_003783725.1 multicopper oxidase family protein -
  QQS40_RS01780 ssb 343080..343547 (-) 468 WP_049357843.1 single-stranded DNA-binding protein Machinery gene
  QQS40_RS01785 uvrA 343710..346541 (+) 2832 WP_297568227.1 excinuclease ABC subunit UvrA -
  QQS40_RS01790 - 346597..348123 (-) 1527 WP_297568230.1 DHA2 family efflux MFS transporter permease subunit -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17293.20 Da        Isoelectric Point: 5.2630

>NTDB_id=842309 QQS40_RS01780 WP_049357843.1 343080..343547(-) (ssb) [Haemophilus parainfluenzae strain HP01]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGGRNQEMGGYTPAQSAPQPSYQSRPAQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=842309 QQS40_RS01780 WP_049357843.1 343080..343547(-) (ssb) [Haemophilus parainfluenzae strain HP01]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAATGATCCTGAAATCCGCACGATGCCAAATGGCGAAGC
GGTAGCAAATATCAGCGTGGCAACAAGTGAAAGCTGGACAGATAAAAACACAGGTGAACGTCGTGAAGTGACCGAATGGC
ACCGCATCGTGTTATATCGTCGTTTAGCGGAAATTGCGGGTCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGTAAATGGCAAGATAACAACGGCCAAGATCGTTACACCACTGAAATCCAGGGTGATAACTTACAAAT
GTTAGGTGGTCGTAATCAAGAGATGGGCGGTTATACACCTGCACAATCAGCACCACAACCAAGCTATCAATCTCGTCCAG
CACAATCTGCGCCAGCGCCACAAGCTGAGCCACCAATGGACGCATTTGATGATAACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8QYE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65

100

0.755
  ssb Vibrio cholerae strain A1552

58.857

100

0.665
  ssb Neisseria meningitidis MC58

51.445

100

0.574
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

33.721

100

0.374