Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QQS40_RS01310 Genome accession   NZ_CP127167
Coordinates   266281..266631 (-) Length   116 a.a.
NCBI ID   WP_289902189.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 261281..271631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS01290 pflA 261617..262357 (-) 741 WP_049357935.1 pyruvate formate lyase 1-activating protein -
  QQS40_RS01295 - 262474..262764 (-) 291 WP_128786860.1 putative quinol monooxygenase -
  QQS40_RS01300 pflB 262847..265159 (-) 2313 WP_172621991.1 formate C-acetyltransferase -
  QQS40_RS01305 focA 265213..266067 (-) 855 WP_289902190.1 formate transporter FocA -
  QQS40_RS01310 comE1/comEA 266281..266631 (-) 351 WP_289902189.1 helix-hairpin-helix domain-containing protein Machinery gene
  QQS40_RS01315 - 266775..267092 (-) 318 WP_128786856.1 heavy metal-binding domain-containing protein -
  QQS40_RS01320 rdgB 267131..267730 (-) 600 WP_049357925.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  QQS40_RS01325 - 267862..268233 (+) 372 WP_049357924.1 DUF305 domain-containing protein -
  QQS40_RS01330 ispH 268282..269226 (-) 945 WP_065244609.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QQS40_RS01335 lspA 269223..269714 (-) 492 WP_289902188.1 signal peptidase II -
  QQS40_RS01340 glmU 269831..271201 (-) 1371 WP_065242722.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12779.64 Da        Isoelectric Point: 8.6056

>NTDB_id=842306 QQS40_RS01310 WP_289902189.1 266281..266631(-) (comE1/comEA) [Haemophilus parainfluenzae strain HP01]
MKLMKHLFSSLFVATTMLSSQVFAEEQVAEQALPQAQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 351 bp        

>NTDB_id=842306 QQS40_RS01310 WP_289902189.1 266281..266631(-) (comE1/comEA) [Haemophilus parainfluenzae strain HP01]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCAACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAACA
AGTGGCTGAACAGGCTCTACCTCAAGCGCAAGTTCAGCAACAAACTGCATCACAAACGACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGCGCATCAGAAATTCAAAAAGCGCTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTACAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGCATAGGTAAAGCAACCTT
AGAGAAAAATCGCGATCGCATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

66.372

97.414

0.647
  comEA/comE1 Glaesserella parasuis strain SC1401

56.14

98.276

0.552
  comEA Acinetobacter baylyi ADP1

38.889

100

0.422
  comEA Vibrio cholerae C6706

41.818

94.828

0.397
  comEA Vibrio cholerae strain A1552

41.818

94.828

0.397