Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QQS40_RS00245 Genome accession   NZ_CP127167
Coordinates   49860..51083 (+) Length   407 a.a.
NCBI ID   WP_128786982.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 44860..56083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS00215 - 45446..46240 (-) 795 WP_329505442.1 sulfite exporter TauE/SafE family protein -
  QQS40_RS00220 rppH 46240..46833 (-) 594 WP_329505444.1 RNA pyrophosphohydrolase -
  QQS40_RS00225 ampD 47318..47881 (-) 564 WP_329505446.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QQS40_RS00230 - 47874..48032 (-) 159 WP_329505448.1 hypothetical protein -
  QQS40_RS00235 pilA 48022..48465 (+) 444 WP_075875764.1 prepilin peptidase-dependent pilin Machinery gene
  QQS40_RS00240 pilB 48472..49851 (+) 1380 WP_329505451.1 GspE/PulE family protein Machinery gene
  QQS40_RS00245 pilC 49860..51083 (+) 1224 WP_128786982.1 type II secretion system F family protein Machinery gene
  QQS40_RS00250 pilD 51080..51757 (+) 678 WP_329505454.1 A24 family peptidase Machinery gene
  QQS40_RS00255 coaE 51843..52463 (+) 621 WP_329505456.1 dephospho-CoA kinase -
  QQS40_RS00260 yacG 52456..52662 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  QQS40_RS00265 - 52659..52940 (+) 282 WP_329505459.1 GNAT family N-acetyltransferase -
  QQS40_RS00270 rhlB 53031..54290 (+) 1260 WP_289901439.1 ATP-dependent RNA helicase RhlB -
  QQS40_RS00275 mreD 54331..54819 (-) 489 WP_149785850.1 rod shape-determining protein MreD -
  QQS40_RS00280 mreC 54819..55883 (-) 1065 WP_049357720.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 46179.68 Da        Isoelectric Point: 9.7422

>NTDB_id=842302 QQS40_RS00245 WP_128786982.1 49860..51083(+) (pilC) [Haemophilus parainfluenzae strain HP01]
MAKQKLFYFQAYDQRQQWQKGSLVAQSKQAAQFQLIAKGFSHIRLQQDWQLNQKPKNAEISALLNQLATLLSSAIPLKNA
LHILQDNCTQLGLHQWLGALIELIESGLPFSQSLEIQGKYLNFQEIQLIQVGEMTGKLAEVCTKIAERRTQSLTLQRKLQ
KIMLYPAMVLGISLSLTLILLLFVVPQFAEMYGENSAELPTLTAVLLAMSQFLQHHFVALMIACTFAIFMLKMALKHSLW
LNQKKHALISRIPIWGNIICLSRLISFSHNLQLMLQSGVALTPALNSFLPKQQTWQTQRTLKGDILLQQEVRSILQWVSQ
GYPFSESVSSHLFPMEAQQMLQIGEKSGKLALMLRHIADNYQEKLNHQIDLLSQLLEPLMMLIIGSLIGIIMMGMYLPIF
NMGSVIQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=842302 QQS40_RS00245 WP_128786982.1 49860..51083(+) (pilC) [Haemophilus parainfluenzae strain HP01]
ATGGCAAAGCAAAAACTCTTTTACTTCCAAGCCTATGATCAGCGGCAACAATGGCAAAAAGGTAGCCTTGTTGCTCAATC
TAAACAAGCTGCTCAATTCCAGTTAATCGCAAAAGGTTTTAGCCACATTCGCTTGCAACAAGATTGGCAACTTAATCAGA
AACCGAAAAATGCAGAAATCAGTGCCTTATTGAATCAACTGGCTACTCTGCTCAGCTCTGCTATTCCATTAAAAAATGCA
TTACACATTTTGCAAGACAACTGCACACAATTGGGTTTGCATCAGTGGCTTGGCGCCTTAATTGAATTAATTGAAAGTGG
TCTTCCGTTTTCACAAAGCTTGGAAATACAAGGAAAGTATTTAAATTTTCAAGAAATTCAGCTCATTCAGGTGGGAGAAA
TGACAGGAAAACTGGCGGAGGTATGCACTAAAATTGCAGAACGTCGAACGCAATCATTAACGCTTCAACGCAAATTGCAA
AAAATTATGCTTTATCCAGCCATGGTATTAGGTATTTCGCTTTCACTTACGTTGATTTTATTACTTTTCGTTGTGCCTCA
ATTTGCTGAAATGTATGGCGAAAATTCCGCTGAATTGCCTACATTAACCGCCGTATTATTAGCTATGTCTCAATTCCTAC
AACATCATTTTGTTGCGTTAATGATTGCCTGCACTTTCGCTATTTTTATGTTGAAGATGGCATTAAAACATTCTCTTTGG
CTGAATCAAAAAAAGCATGCCCTAATTAGTCGCATACCAATTTGGGGCAATATCATTTGCCTTTCTCGTCTAATCAGTTT
TAGCCATAACCTGCAATTAATGCTTCAATCCGGAGTGGCATTAACGCCAGCCTTAAATAGCTTTCTCCCCAAACAACAAA
CCTGGCAAACACAACGTACCTTAAAAGGCGATATTCTGCTACAACAAGAAGTGCGGTCAATTTTGCAGTGGGTTTCTCAA
GGTTACCCTTTTTCTGAAAGCGTCAGTAGTCATCTTTTCCCAATGGAAGCTCAACAAATGCTACAAATTGGAGAGAAAAG
TGGAAAACTTGCGTTGATGTTGCGTCATATTGCTGATAACTATCAAGAAAAACTCAATCATCAAATTGATTTACTTTCCC
AACTTTTAGAGCCTTTAATGATGCTCATCATTGGTAGTTTAATCGGTATTATTATGATGGGCATGTATCTGCCAATTTTC
AATATGGGATCTGTAATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-398)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

69.802

99.263

0.693
  pilC Haemophilus influenzae 86-028NP

69.059

99.263

0.685
  pilC Glaesserella parasuis strain SC1401

40.15

98.526

0.396