Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPK24_RS23415 Genome accession   NZ_CP127162
Coordinates   4918253..4918738 (-) Length   161 a.a.
NCBI ID   WP_213530957.1    Uniprot ID   -
Organism   Paenibacillus polygoni strain C31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4913253..4923738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK24_RS23400 (QPK24_23400) - 4914232..4915983 (-) 1752 WP_285745200.1 ABC transporter substrate-binding protein -
  QPK24_RS23405 (QPK24_23405) - 4917029..4917652 (-) 624 WP_285745202.1 M15 family metallopeptidase -
  QPK24_RS23410 (QPK24_23410) rpsR 4917964..4918233 (-) 270 WP_160035535.1 30S ribosomal protein S18 -
  QPK24_RS23415 (QPK24_23415) ssbA 4918253..4918738 (-) 486 WP_213530957.1 single-stranded DNA-binding protein Machinery gene
  QPK24_RS23420 (QPK24_23420) rpsF 4918790..4919074 (-) 285 WP_160035531.1 30S ribosomal protein S6 -
  QPK24_RS23425 (QPK24_23425) - 4919275..4919469 (+) 195 WP_160035529.1 YjzC family protein -
  QPK24_RS23435 (QPK24_23435) - 4920093..4920302 (-) 210 WP_285745207.1 DUF951 domain-containing protein -
  QPK24_RS23440 (QPK24_23440) - 4920292..4921254 (-) 963 WP_407083041.1 mechanosensitive ion channel family protein -
  QPK24_RS23445 (QPK24_23445) - 4921299..4921547 (-) 249 WP_285745211.1 DUF3343 domain-containing protein -
  QPK24_RS23450 (QPK24_23450) yyaC 4921654..4922265 (+) 612 WP_285745213.1 spore protease YyaC -
  QPK24_RS23455 (QPK24_23455) - 4922237..4922737 (-) 501 WP_285745215.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17885.67 Da        Isoelectric Point: 4.8369

>NTDB_id=842216 QPK24_RS23415 WP_213530957.1 4918253..4918738(-) (ssbA) [Paenibacillus polygoni strain C31]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSRDGGNTNSGGTVREEPSFGGSGNGNRGNNNFSRNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=842216 QPK24_RS23415 WP_213530957.1 4918253..4918738(-) (ssbA) [Paenibacillus polygoni strain C31]
TTGTTGAACCGAGTCATTCTGATTGGCCGGTTAACCCGTGATCCTGAATTACGTTATACTCCTGCTGGAGTAGCCGTGAC
TCAATTCACACTTGCTGTAGACCGTCCGTTTACAAGTCAAGGTGGAGAACGGGAAGCTGATTTTATACCGGTCGTTACCT
GGAGACAGCTAGCGGAAACTTGTGCAAATTATTTGCGTAAAGGCCGTCTAACAGCCGTCGAGGGACGCATTCAAGTACGT
AATTATGAGAATAACGAAGGTAAACGTGTATACGTTACTGAAGTTATCGCTGATAACGTTCGTTTCTTGGAATCTAGCCG
TGATGGTGGCAACACAAATAGCGGTGGAACTGTGCGTGAAGAGCCTTCATTCGGAGGCAGCGGCAACGGTAACCGAGGGA
ACAACAATTTCTCACGGAACAATCAGGATCCTTTTTCGGATGACGGTAAACCGATTGATATTTCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.225

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

51.462

100

0.547
  ssb Neisseria meningitidis MC58

33.889

100

0.379
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

64.596

0.373
  ssb Neisseria gonorrhoeae MS11

32.778

100

0.366