Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QQS68_RS22360 Genome accession   NZ_CP127081
Coordinates   4413040..4414548 (+) Length   502 a.a.
NCBI ID   WP_152060836.1    Uniprot ID   -
Organism   Shigella flexneri 1b strain SF-018-002     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4408040..4419548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS68_RS22335 (QQS68_22315) ilvE 4409596..4410525 (-) 930 WP_000208523.1 branched-chain-amino-acid transaminase -
  QQS68_RS22340 (QQS68_22320) ilvM 4410545..4410808 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  QQS68_RS22345 (QQS68_22325) ilvG 4410805..4412451 (-) 1647 WP_001012613.1 acetolactate synthase 2 catalytic subunit -
  QQS68_RS22350 (QQS68_22330) ilvX 4412454..4412504 (-) 51 WP_001387183.1 peptide IlvX -
  QQS68_RS22355 (QQS68_22335) ilvL 4412590..4412688 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QQS68_RS22360 (QQS68_22340) comM 4413040..4414548 (+) 1509 WP_152060836.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QQS68_RS22365 (QQS68_22345) maoP 4414573..4414911 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  QQS68_RS22370 (QQS68_22350) hdfR 4415030..4415869 (+) 840 WP_000379245.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54836.89 Da        Isoelectric Point: 7.1373

>NTDB_id=841489 QQS68_RS22360 WP_152060836.1 4413040..4414548(+) (comM) [Shigella flexneri 1b strain SF-018-002]
MSLSIVHTRAALEVNAPPITVEVHISKGLPGLTMVGLTETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKNTLERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSA
TVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQH
LQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=841489 QQS68_RS22360 WP_152060836.1 4413040..4414548(+) (comM) [Shigella flexneri 1b strain SF-018-002]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGAAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTAACAGAAACAACGGTGAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTAGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGAACACTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAACGAGGACTGGAAATTACCGCCGCTGGTGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGTTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAGCCCTACCGGACA
TTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGCCCTTTCTCGACC
GCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGAGAAAGCAGCGCC
ACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTGGCTGGATAGTCC
GGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGAAACGCTGATCCATCTGGGGTTATCGA
TTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATCACACGTCAGCAT
TTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-382)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(396-488)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.926

100

0.59
  comM Vibrio cholerae strain A1552

58.765

100

0.588
  comM Glaesserella parasuis strain SC1401

57.791

100

0.584
  comM Vibrio campbellii strain DS40M4

57.143

100

0.574
  comM Legionella pneumophila str. Paris

47.59

99.203

0.472
  comM Legionella pneumophila strain ERS1305867

47.59

99.203

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.448