Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QPX86_RS01760 Genome accession   NZ_CP126972
Coordinates   383241..384761 (-) Length   506 a.a.
NCBI ID   WP_285163926.1    Uniprot ID   -
Organism   Shewanella goraebulensis strain DAU312     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 378241..389761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX86_RS01750 - 381246..382178 (-) 933 WP_220752371.1 acyltransferase -
  QPX86_RS01755 - 382183..383079 (-) 897 WP_285163925.1 acyltransferase -
  QPX86_RS01760 comM 383241..384761 (-) 1521 WP_285163926.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QPX86_RS01765 - 384901..385926 (-) 1026 WP_285163927.1 M48 family metallopeptidase -
  QPX86_RS01770 - 385955..387202 (-) 1248 WP_285163928.1 YjgN family protein -
  QPX86_RS01775 - 387568..388578 (+) 1011 WP_285163929.1 ABC transporter substrate-binding protein -
  QPX86_RS01780 ilvY 388627..389499 (-) 873 WP_220752359.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55175.55 Da        Isoelectric Point: 8.1336

>NTDB_id=840889 QPX86_RS01760 WP_285163926.1 383241..384761(-) (comM) [Shewanella goraebulensis strain DAU312]
MAIACVVTRACCGVEAPKVTVEVHLSNGLPAFNLVGLPETSVKEARERVRSALINAGFEFPMQRITVNLAPADLPKQGGR
YDLPIAIGILAASGQVPSDKLAHSEFIGELALSGEVRPCIGILPAIIAAKNQQHQLFIPIENRREAELVGFEQTHFVAHL
QHLAAFMHGQAQLPLVDQQPQWFEDEATGPQLCLSEVIGQYQAKQGLEIAAAGGHNTLFLGPPGTGKSMLANRIIPLLPK
LSYEEAIDVAAIHSVAGLNIKPNAFLERPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGILFLDEIAEFPRKVLDCLRE
PMESGEVVISRAAAKVKFSSRFQLIAAMNPSPCGDVDNARSTPDQIQRYLSKLSGPFLDRFDLTIEVPKLPAGTLTQPQQ
TAESSASIAKRVNQARQIQLSRAGLLNSELSPSLLKQYLNMNQADLEFLDASVQQLGLSVRSFHRIQRVARTIADLQQSK
TTERRHIAQALGYRAMDRLMSRLRQQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=840889 QPX86_RS01760 WP_285163926.1 383241..384761(-) (comM) [Shewanella goraebulensis strain DAU312]
ATGGCGATTGCCTGCGTTGTCACTCGTGCTTGCTGCGGCGTTGAAGCTCCTAAAGTCACAGTCGAAGTTCACCTAAGTAA
TGGATTACCTGCTTTTAATTTAGTCGGATTACCAGAAACCTCAGTTAAAGAAGCCCGTGAACGGGTTAGAAGTGCATTAA
TCAACGCTGGCTTTGAGTTTCCCATGCAGCGCATTACCGTTAACCTCGCTCCAGCCGACCTCCCCAAACAAGGAGGTCGA
TATGACTTGCCCATTGCAATCGGTATTTTAGCGGCTTCAGGCCAAGTGCCGTCGGATAAATTGGCTCACAGTGAATTTAT
TGGAGAGCTGGCGCTATCAGGGGAGGTTCGTCCATGTATTGGCATACTGCCAGCAATCATTGCAGCCAAGAACCAACAAC
ATCAATTGTTTATCCCTATAGAAAACAGACGAGAAGCGGAGTTAGTCGGCTTTGAGCAAACTCATTTTGTTGCCCATTTA
CAACACCTAGCTGCCTTTATGCATGGCCAAGCTCAATTACCACTTGTTGACCAGCAACCGCAATGGTTTGAAGATGAAGC
AACAGGCCCGCAGTTATGCTTAAGCGAAGTCATTGGCCAATATCAGGCCAAGCAAGGGTTAGAAATCGCAGCAGCAGGTG
GGCACAACACTCTATTCTTAGGCCCTCCCGGCACCGGCAAAAGTATGCTCGCTAACCGAATCATTCCGCTATTGCCCAAG
CTCAGTTATGAAGAAGCTATTGATGTTGCCGCTATTCATTCGGTCGCAGGGTTAAACATCAAACCTAACGCTTTTCTTGA
ACGTCCCTTTAGAGCACCGCATCACACATGCTCATCAATTTCATTAGTTGGCGGTGGCAGCATCCCAAAGCCGGGGGAGA
TATCATTAGCCCATAGAGGAATATTGTTTTTAGATGAAATAGCCGAGTTTCCACGAAAAGTATTAGATTGCCTACGTGAA
CCTATGGAGTCTGGCGAAGTCGTCATTTCTCGCGCAGCAGCAAAAGTAAAATTCTCGAGTCGTTTTCAACTGATTGCAGC
CATGAACCCAAGCCCTTGTGGCGATGTAGATAATGCCCGCTCAACTCCTGACCAAATTCAGCGTTATCTATCTAAACTTT
CAGGTCCATTTTTAGACCGTTTTGATTTAACAATCGAAGTCCCTAAACTGCCAGCAGGCACTCTCACCCAACCCCAGCAA
ACGGCTGAAAGCAGTGCAAGCATTGCCAAAAGGGTCAATCAAGCAAGACAGATACAGTTATCGCGCGCAGGTTTGCTCAA
CAGTGAACTGTCCCCTTCACTGTTAAAGCAGTATTTAAACATGAACCAAGCTGACTTAGAGTTTTTAGACGCAAGTGTGC
AGCAGCTCGGTTTATCTGTGAGAAGCTTTCATCGGATCCAGCGGGTTGCTCGAACCATCGCTGACCTACAGCAATCCAAA
ACGACTGAAAGACGTCATATTGCTCAAGCATTAGGATATCGAGCCATGGATAGATTAATGAGTCGTTTAAGGCAACAGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.709

100

0.559
  comM Vibrio campbellii strain DS40M4

54.724

100

0.549
  comM Haemophilus influenzae Rd KW20

53.831

100

0.542
  comM Glaesserella parasuis strain SC1401

52.86

100

0.53
  comM Legionella pneumophila str. Paris

46.693

98.617

0.46
  comM Legionella pneumophila strain ERS1305867

46.693

98.617

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.744

99.407

0.425