Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   F6I26_RS01160 Genome accession   NZ_CP126961
Coordinates   208046..208339 (+) Length   97 a.a.
NCBI ID   WP_024053127.1    Uniprot ID   A0A412PLL4
Organism   Streptococcus anginosus strain UMB4708     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203046..213339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS01125 (F6I26_001125) - 203101..203460 (+) 360 WP_003070793.1 MerR family transcriptional regulator -
  F6I26_RS01130 (F6I26_001130) glnA 203498..204844 (+) 1347 WP_024053132.1 type I glutamate--ammonia ligase -
  F6I26_RS01135 (F6I26_001135) - 205032..205397 (+) 366 WP_024053131.1 DUF1033 family protein -
  F6I26_RS01140 (F6I26_001140) comYA 205467..206408 (+) 942 WP_024053130.1 competence type IV pilus ATPase ComGA Machinery gene
  F6I26_RS01145 (F6I26_001145) comYB 206350..207372 (+) 1023 WP_171021869.1 competence type IV pilus assembly protein ComGB Machinery gene
  F6I26_RS01150 (F6I26_001150) comYC 207369..207686 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  F6I26_RS01155 (F6I26_001155) comYD 207676..208074 (+) 399 WP_022525973.1 competence type IV pilus minor pilin ComGD Machinery gene
  F6I26_RS01160 (F6I26_001160) comGE/cglE 208046..208339 (+) 294 WP_024053127.1 competence type IV pilus minor pilin ComGE Machinery gene
  F6I26_RS01165 (F6I26_001165) comGF/cglF 208323..208760 (+) 438 WP_024053126.1 competence type IV pilus minor pilin ComGF Machinery gene
  F6I26_RS01170 (F6I26_001170) comGG 208741..209067 (+) 327 WP_257360478.1 competence type IV pilus minor pilin ComGG -
  F6I26_RS01175 (F6I26_001175) comYH 209139..210092 (+) 954 WP_024053125.1 class I SAM-dependent methyltransferase Machinery gene
  F6I26_RS01180 (F6I26_001180) - 210139..211338 (+) 1200 WP_024053124.1 acetate kinase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10836.84 Da        Isoelectric Point: 10.6170

>NTDB_id=840762 F6I26_RS01160 WP_024053127.1 208046..208339(+) (comGE/cglE) [Streptococcus anginosus strain UMB4708]
MGNLRKQHVKGTILLEALLALAVFVTIVTLLLGQIHQSRKAENDLLREEEVLRVAKMALQTKQSHLTMNGIKVRVETSQQ
GIQIYHGKELILGVQGK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=840762 F6I26_RS01160 WP_024053127.1 208046..208339(+) (comGE/cglE) [Streptococcus anginosus strain UMB4708]
ATGGGAAATTTAAGAAAACAACACGTTAAAGGAACGATTTTATTAGAGGCGCTGCTGGCTTTGGCTGTTTTTGTGACAAT
TGTGACCCTGTTGTTGGGACAAATTCACCAGTCTCGAAAAGCAGAAAATGACTTGCTTAGAGAAGAAGAAGTTTTAAGGG
TAGCTAAAATGGCTTTGCAGACAAAGCAAAGCCATTTGACAATGAACGGTATTAAAGTGCGTGTTGAAACAAGTCAACAA
GGTATTCAAATTTATCATGGGAAGGAGCTGATTCTCGGTGTTCAAGGCAAATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PLL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

50.526

97.938

0.495
  comGE/cglE Streptococcus pneumoniae D39

50.526

97.938

0.495
  comGE/cglE Streptococcus pneumoniae R6

50.526

97.938

0.495
  comGE/cglE Streptococcus pneumoniae TIGR4

50.526

97.938

0.495
  comGE/cglE Streptococcus mitis NCTC 12261

49.474

97.938

0.485
  comGE/cglE Streptococcus mitis SK321

49.474

97.938

0.485
  comYE Streptococcus mutans UA140

45.455

100

0.464
  comYE Streptococcus mutans UA159

45.455

100

0.464