Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QPR63_RS01665 Genome accession   NZ_CP126878
Coordinates   347667..348191 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain Ehh_21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 342667..353191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR63_RS01645 (QPR63_01645) aphA 342991..343704 (+) 714 WP_062933760.1 acid phosphatase AphA -
  QPR63_RS01650 (QPR63_01650) - 343817..344233 (+) 417 WP_062933759.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QPR63_RS01655 (QPR63_01655) - 344236..344589 (+) 354 WP_045141430.1 MmcQ/YjbR family DNA-binding protein -
  QPR63_RS01660 (QPR63_01660) uvrA 344593..347415 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  QPR63_RS01665 (QPR63_01665) ssb 347667..348191 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QPR63_RS01670 (QPR63_01670) - 348252..348533 (-) 282 WP_003860282.1 YjcB family protein -
  QPR63_RS01675 (QPR63_01675) - 348977..350377 (+) 1401 WP_062933758.1 sensor domain-containing diguanylate cyclase -
  QPR63_RS01680 (QPR63_01680) - 350643..352208 (+) 1566 WP_062933757.1 EAL domain-containing protein -
  QPR63_RS01685 (QPR63_01685) soxS 352215..352541 (-) 327 WP_047052085.1 superoxide response transcriptional regulator SoxS -
  QPR63_RS01690 (QPR63_01690) soxR 352640..353098 (+) 459 WP_062933756.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=840379 QPR63_RS01665 WP_003860284.1 347667..348191(+) (ssb) [Enterobacter hormaechei strain Ehh_21]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=840379 QPR63_RS01665 WP_003860284.1 347667..348191(+) (ssb) [Enterobacter hormaechei strain Ehh_21]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374