Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VKP56_RS06035 Genome accession   NZ_CP142350
Coordinates   1183345..1185006 (-) Length   553 a.a.
NCBI ID   WP_002983909.1    Uniprot ID   A0A0H2UW49
Organism   Streptococcus pyogenes strain SS1445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1178345..1190006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS06010 (VKP56_06010) - 1179409..1179684 (-) 276 WP_111713725.1 HU family DNA-binding protein -
  VKP56_RS06015 (VKP56_06015) - 1179783..1180370 (-) 588 WP_002989129.1 YpmS family protein -
  VKP56_RS06020 (VKP56_06020) - 1180348..1181190 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  VKP56_RS06025 (VKP56_06025) - 1181183..1182022 (-) 840 WP_002989125.1 DegV family protein -
  VKP56_RS06030 (VKP56_06030) - 1182250..1183173 (-) 924 WP_136305148.1 LPXTG cell wall anchor domain-containing protein -
  VKP56_RS06035 (VKP56_06035) recN 1183345..1185006 (-) 1662 WP_002983909.1 DNA repair protein RecN Machinery gene
  VKP56_RS06040 (VKP56_06040) - 1185028..1185498 (-) 471 WP_002983907.1 arginine repressor -
  VKP56_RS06045 (VKP56_06045) - 1185485..1186312 (-) 828 WP_115354049.1 TlyA family RNA methyltransferase -
  VKP56_RS06050 (VKP56_06050) - 1186305..1187177 (-) 873 WP_011284950.1 polyprenyl synthetase family protein -
  VKP56_RS06055 (VKP56_06055) - 1187177..1187392 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  VKP56_RS06060 (VKP56_06060) xseA 1187370..1188710 (-) 1341 WP_014407687.1 exodeoxyribonuclease VII large subunit -
  VKP56_RS06065 (VKP56_06065) - 1188863..1189717 (-) 855 WP_023079370.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62285.44 Da        Isoelectric Point: 4.6120

>NTDB_id=840138 VKP56_RS06035 WP_002983909.1 1183345..1185006(-) (recN) [Streptococcus pyogenes strain SS1445]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=840138 VKP56_RS06035 WP_002983909.1 1183345..1185006(-) (recN) [Streptococcus pyogenes strain SS1445]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGATGATTTGTCTTCAGGGGACCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCAG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452