Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QPX65_RS13605 Genome accession   NZ_CP126698
Coordinates   2845625..2846164 (-) Length   179 a.a.
NCBI ID   WP_011079389.1    Uniprot ID   Q7MHB8
Organism   Vibrio vulnificus strain VV2018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2840625..2851164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS13585 (QPX65_13585) - 2841042..2841362 (-) 321 WP_011079393.1 MSHA biogenesis protein MshK -
  QPX65_RS13590 (QPX65_13590) gspM 2841355..2842005 (-) 651 WP_045622003.1 type II secretion system protein GspM -
  QPX65_RS13595 (QPX65_13595) - 2842002..2843462 (-) 1461 WP_285454693.1 MSHA biogenesis protein MshI -
  QPX65_RS13600 (QPX65_13600) csrD 2843475..2845472 (-) 1998 WP_188011739.1 RNase E specificity factor CsrD -
  QPX65_RS13605 (QPX65_13605) ssb 2845625..2846164 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  QPX65_RS13610 (QPX65_13610) qstR 2846464..2847111 (+) 648 WP_011079388.1 response regulator transcription factor Regulator
  QPX65_RS13615 (QPX65_13615) galU 2847300..2848172 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QPX65_RS13620 (QPX65_13620) uvrA 2848315..2851137 (+) 2823 WP_224642036.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19794.97 Da        Isoelectric Point: 5.2358

>NTDB_id=839658 QPX65_RS13605 WP_011079389.1 2845625..2846164(-) (ssb) [Vibrio vulnificus strain VV2018]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=839658 QPX65_RS13605 WP_011079389.1 2845625..2846164(-) (ssb) [Vibrio vulnificus strain VV2018]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGCAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.333

100

0.838
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.553
  ssb Neisseria meningitidis MC58

46.237

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.237

100

0.48