Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QPX65_RS13610 Genome accession   NZ_CP126698
Coordinates   2846464..2847111 (+) Length   215 a.a.
NCBI ID   WP_011079388.1    Uniprot ID   Q7MHB7
Organism   Vibrio vulnificus strain VV2018     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841464..2852111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS13595 (QPX65_13595) - 2842002..2843462 (-) 1461 WP_285454693.1 MSHA biogenesis protein MshI -
  QPX65_RS13600 (QPX65_13600) csrD 2843475..2845472 (-) 1998 WP_188011739.1 RNase E specificity factor CsrD -
  QPX65_RS13605 (QPX65_13605) ssb 2845625..2846164 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  QPX65_RS13610 (QPX65_13610) qstR 2846464..2847111 (+) 648 WP_011079388.1 response regulator transcription factor Regulator
  QPX65_RS13615 (QPX65_13615) galU 2847300..2848172 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QPX65_RS13620 (QPX65_13620) uvrA 2848315..2851137 (+) 2823 WP_224642036.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24673.63 Da        Isoelectric Point: 9.8565

>NTDB_id=839659 QPX65_RS13610 WP_011079388.1 2846464..2847111(+) (qstR) [Vibrio vulnificus strain VV2018]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=839659 QPX65_RS13610 WP_011079388.1 2846464..2847111(+) (qstR) [Vibrio vulnificus strain VV2018]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCTGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACTGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATTACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCATTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGATGCGTGCAATCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47