Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QPX65_RS04420 Genome accession   NZ_CP126698
Coordinates   940790..941092 (+) Length   100 a.a.
NCBI ID   WP_011078144.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935790..946092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS04405 (QPX65_04405) lon 935804..938155 (+) 2352 WP_011078147.1 endopeptidase La -
  QPX65_RS04410 (QPX65_04410) - 938349..938621 (+) 273 WP_013572181.1 HU family DNA-binding protein -
  QPX65_RS04415 (QPX65_04415) ppiD 938798..940657 (+) 1860 WP_130350167.1 peptidylprolyl isomerase -
  QPX65_RS04420 (QPX65_04420) comEA 940790..941092 (+) 303 WP_011078144.1 helix-hairpin-helix domain-containing protein Machinery gene
  QPX65_RS04425 (QPX65_04425) rrtA 941139..941699 (-) 561 WP_332195664.1 rhombosortase -
  QPX65_RS04430 (QPX65_04430) - 941703..942311 (+) 609 WP_080538096.1 DTW domain-containing protein -
  QPX65_RS04435 (QPX65_04435) - 942333..943664 (-) 1332 WP_188011565.1 anti-phage deoxyguanosine triphosphatase -
  QPX65_RS04440 (QPX65_04440) yfbR 943670..944218 (-) 549 WP_231846899.1 5'-deoxynucleotidase -
  QPX65_RS04445 (QPX65_04445) - 944335..945549 (-) 1215 WP_285456046.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10866.71 Da        Isoelectric Point: 9.6573

>NTDB_id=839637 QPX65_RS04420 WP_011078144.1 940790..941092(+) (comEA) [Vibrio vulnificus strain VV2018]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=839637 QPX65_RS04420 WP_011078144.1 940790..941092(+) (comEA) [Vibrio vulnificus strain VV2018]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36