Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JN167_RS05715 Genome accession   NZ_AP024201
Coordinates   1210905..1211777 (+) Length   290 a.a.
NCBI ID   WP_047526439.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Tokyo13069     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1205905..1216777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN167_RS05695 (TMSFP069_11060) ylqF 1206670..1207554 (+) 885 WP_047526435.1 ribosome biogenesis GTPase YlqF -
  JN167_RS05700 (TMSFP069_11070) - 1207538..1208305 (+) 768 WP_047526437.1 ribonuclease HII -
  JN167_RS05705 (TMSFP069_11080) sucC 1208414..1209580 (+) 1167 WP_001020805.1 ADP-forming succinate--CoA ligase subunit beta -
  JN167_RS05710 (TMSFP069_11090) sucD 1209602..1210510 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  JN167_RS05715 (TMSFP069_11100) dprA 1210905..1211777 (+) 873 WP_047526439.1 DNA-processing protein DprA Machinery gene
  JN167_RS05720 (TMSFP069_11110) topA 1211951..1214026 (+) 2076 WP_072292005.1 type I DNA topoisomerase -
  JN167_RS05725 (TMSFP069_11120) trmFO 1214182..1215489 (+) 1308 WP_000195261.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33155.08 Da        Isoelectric Point: 9.2160

>NTDB_id=83963 JN167_RS05715 WP_047526439.1 1210905..1211777(+) (dprA) [Staphylococcus argenteus strain Tokyo13069]
MINQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNELYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNADDILEDYFI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=83963 JN167_RS05715 WP_047526439.1 1210905..1211777(+) (dprA) [Staphylococcus argenteus strain Tokyo13069]
ATGATAAATCAAATTTTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGCTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACCAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATCGTTTCTGGGCTTGCTCAAGGTGCAGATGCGATGGCACATCAA
ATAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCACATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTGATGATATATTAGAAGATTACTTTATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

67.466

100

0.679
  dprA Staphylococcus aureus N315

67.466

100

0.679
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus mitis SK321

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

37.367

96.897

0.362

Multiple sequence alignment