Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JN157_RS05720 Genome accession   NZ_AP024200
Coordinates   1210903..1211775 (+) Length   290 a.a.
NCBI ID   WP_047526439.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Tokyo13064     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1205903..1216775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN157_RS05700 (TMSFP064_11040) ylqF 1206668..1207552 (+) 885 WP_047526435.1 ribosome biogenesis GTPase YlqF -
  JN157_RS05705 (TMSFP064_11050) - 1207536..1208303 (+) 768 WP_047526437.1 ribonuclease HII -
  JN157_RS05710 (TMSFP064_11060) sucC 1208412..1209578 (+) 1167 WP_001020805.1 ADP-forming succinate--CoA ligase subunit beta -
  JN157_RS05715 (TMSFP064_11070) sucD 1209600..1210508 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  JN157_RS05720 (TMSFP064_11080) dprA 1210903..1211775 (+) 873 WP_047526439.1 DNA-processing protein DprA Machinery gene
  JN157_RS05725 (TMSFP064_11090) topA 1211949..1214024 (+) 2076 WP_072292005.1 type I DNA topoisomerase -
  JN157_RS05730 (TMSFP064_11100) trmFO 1214180..1215487 (+) 1308 WP_000195261.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33155.08 Da        Isoelectric Point: 9.2160

>NTDB_id=83922 JN157_RS05720 WP_047526439.1 1210903..1211775(+) (dprA) [Staphylococcus argenteus strain Tokyo13064]
MINQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNELYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNADDILEDYFI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=83922 JN157_RS05720 WP_047526439.1 1210903..1211775(+) (dprA) [Staphylococcus argenteus strain Tokyo13064]
ATGATAAATCAAATTTTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGCTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACCAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATCGTTTCTGGGCTTGCTCAAGGTGCAGATGCGATGGCACATCAA
ATAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCACATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTGATGATATATTAGAAGATTACTTTATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

67.466

100

0.679
  dprA Staphylococcus aureus N315

67.466

100

0.679
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus mitis SK321

37.722

96.897

0.366
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

37.367

96.897

0.362

Multiple sequence alignment