Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QPK06_RS08365 Genome accession   NZ_CP126578
Coordinates   1774915..1776429 (+) Length   504 a.a.
NCBI ID   WP_139742473.1    Uniprot ID   -
Organism   Aeromonas veronii strain AV066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1769915..1781429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK06_RS08350 (QPK06_08350) - 1771652..1772596 (-) 945 WP_128834710.1 branched-chain amino acid transaminase -
  QPK06_RS08355 (QPK06_08355) ilvM 1772609..1772887 (-) 279 WP_064337574.1 acetolactate synthase 2 small subunit -
  QPK06_RS08360 (QPK06_08360) ilvG 1772884..1774530 (-) 1647 WP_139742474.1 acetolactate synthase 2 catalytic subunit -
  QPK06_RS08365 (QPK06_08365) comM 1774915..1776429 (+) 1515 WP_139742473.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QPK06_RS08370 (QPK06_08370) - 1776557..1777456 (+) 900 WP_139742472.1 acyltransferase -
  QPK06_RS08375 (QPK06_08375) - 1777463..1778428 (+) 966 WP_139742471.1 acyltransferase -
  QPK06_RS08380 (QPK06_08380) - 1778353..1778856 (-) 504 WP_139742470.1 DUF523 domain-containing protein -
  QPK06_RS08385 (QPK06_08385) - 1778853..1779503 (-) 651 WP_069555606.1 DNA mismatch repair protein MutT -
  QPK06_RS08390 (QPK06_08390) - 1779578..1780213 (+) 636 WP_042055347.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54584.45 Da        Isoelectric Point: 7.4493

>NTDB_id=838921 QPK06_RS08365 WP_139742473.1 1774915..1776429(+) (comM) [Aeromonas veronii strain AV066]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDQQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=838921 QPK06_RS08365 WP_139742473.1 1774915..1776429(+) (comM) [Aeromonas veronii strain AV066]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTTGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCAGCTTCAAAACAAATACCTGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGTGTGCTGCCCGCCGTACTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCCGAAGCTTCTCTTATTCAGGATGCCGAGGTGCGCACCGCTCACCAGCTG
TTGGCCGTCACCGCCTGGCTGGCCGGTCAGTACGAACTGCCGCTGCCGGATCAACAAAGCGCGGAGAGCCTGCCCGATGT
ACCGGATCTACAGGATGTGATCGGCCAGTCACAGGCCAAACGGGCGCTGGAGATTGCCGCCGCCGGCAGCCACAACCTAT
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAACAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCAGCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTTGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGCTACCGGGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464