Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUL007_RS03670 Genome accession   NZ_CP126569
Coordinates   702811..703320 (+) Length   169 a.a.
NCBI ID   WP_021165649.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 697811..708320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS03645 (LLUL007_03620) - 698840..699424 (+) 585 WP_396426151.1 GNAT family N-acetyltransferase -
  LLUL007_RS03650 (LLUL007_03625) - 699516..699914 (+) 399 WP_396426152.1 hypothetical protein -
  LLUL007_RS03655 (LLUL007_03630) - 700020..700952 (+) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLUL007_RS03660 (LLUL007_03635) - 700949..702310 (+) 1362 WP_396426153.1 ABC transporter permease -
  LLUL007_RS03665 (LLUL007_03640) comEC 702410..702814 (+) 405 WP_396426352.1 ComEC/Rec2 family competence protein Machinery gene
  LLUL007_RS03670 (LLUL007_03645) comEC 702811..703320 (+) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLUL007_RS03675 (LLUL007_03650) - 703397..704287 (+) 891 WP_396426154.1 IS982 family transposase -
  LLUL007_RS03680 (LLUL007_03655) - 704308..704613 (+) 306 Protein_706 ComEC/Rec2 family competence protein -
  LLUL007_RS03685 (LLUL007_03660) - 704897..705673 (+) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUL007_RS03690 (LLUL007_03665) - 705856..706071 (+) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUL007_RS03695 (LLUL007_03670) atpB 706118..706831 (+) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUL007_RS03700 (LLUL007_03675) atpF 706846..707352 (+) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUL007_RS03705 (LLUL007_03680) - 707354..707881 (+) 528 WP_014572213.1 F0F1 ATP synthase subunit delta -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18923.62 Da        Isoelectric Point: 6.9787

>NTDB_id=838722 LLUL007_RS03670 WP_021165649.1 702811..703320(+) (comEC) [Lactococcus cremoris strain UL007]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDFLSLADKIKIREIWISPGELTNISFVEKLKKAKIPIHVSKVGDKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHT
KFLFTDPNC

Nucleotide


Download         Length: 510 bp        

>NTDB_id=838722 LLUL007_RS03670 WP_021165649.1 702811..703320(+) (comEC) [Lactococcus cremoris strain UL007]
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATTTCTTGTCCTTAGCTGATAAAATAAAAATAAGAGAAATCTGGATTAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTCATGTTAGTAAAGTTGGGGATAAAATTCCGATTTTTGATAGTTTTC
TTCAAGTTTTATCAAATGGTTACACTAAAAAAGGGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACA
AAATTTCTTTTTACAGACCCGAATTGCTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(11-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

98.788

97.633

0.964
  comEC/celB Streptococcus mitis SK321

46.707

98.817

0.462
  comEC/celB Streptococcus pneumoniae TIGR4

44.91

98.817

0.444
  comEC/celB Streptococcus pneumoniae Rx1

44.311

98.817

0.438
  comEC/celB Streptococcus pneumoniae D39

44.311

98.817

0.438
  comEC/celB Streptococcus pneumoniae R6

44.311

98.817

0.438
  comEC/celB Streptococcus mitis NCTC 12261

43.713

98.817

0.432
  comEC Latilactobacillus sakei subsp. sakei 23K

38.037

96.45

0.367