Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNO02_RS30140 Genome accession   NZ_CP126535
Coordinates   6940071..6940556 (-) Length   161 a.a.
NCBI ID   WP_017691432.1    Uniprot ID   A0A5M9UHS8
Organism   Paenibacillus sp. PK1-4R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6935071..6945556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNO02_RS30115 (QNO02_30115) opp4B 6935286..6936248 (-) 963 WP_221820232.1 oligopeptide ABC transporter permease -
  QNO02_RS30120 (QNO02_30120) - 6936256..6937188 (-) 933 WP_074092894.1 ATP-binding cassette domain-containing protein -
  QNO02_RS30125 (QNO02_30125) - 6937203..6938192 (-) 990 WP_289390790.1 ABC transporter ATP-binding protein -
  QNO02_RS30130 (QNO02_30130) - 6938920..6939513 (-) 594 WP_289390791.1 M15 family metallopeptidase -
  QNO02_RS30135 (QNO02_30135) rpsR 6939742..6940014 (-) 273 WP_017691433.1 30S ribosomal protein S18 -
  QNO02_RS30140 (QNO02_30140) ssbA 6940071..6940556 (-) 486 WP_017691432.1 single-stranded DNA-binding protein Machinery gene
  QNO02_RS30145 (QNO02_30145) rpsF 6940605..6940898 (-) 294 WP_036611944.1 30S ribosomal protein S6 -
  QNO02_RS30150 (QNO02_30150) - 6941101..6941295 (+) 195 WP_036671877.1 YjzC family protein -
  QNO02_RS30160 (QNO02_30160) - 6941927..6942136 (-) 210 WP_036611950.1 DUF951 domain-containing protein -
  QNO02_RS30165 (QNO02_30165) - 6942126..6943064 (-) 939 WP_289390792.1 mechanosensitive ion channel family protein -
  QNO02_RS30170 (QNO02_30170) - 6943079..6943342 (-) 264 WP_017691427.1 DUF3343 domain-containing protein -
  QNO02_RS30175 (QNO02_30175) yyaC 6943460..6944065 (+) 606 WP_036611957.1 spore protease YyaC -
  QNO02_RS30180 (QNO02_30180) - 6944040..6944540 (-) 501 WP_036671879.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17806.63 Da        Isoelectric Point: 4.8369

>NTDB_id=838626 QNO02_RS30140 WP_017691432.1 6940071..6940556(-) (ssbA) [Paenibacillus sp. PK1-4R]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEKEADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNSGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=838626 QNO02_RS30140 WP_017691432.1 6940071..6940556(-) (ssbA) [Paenibacillus sp. PK1-4R]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTGCGTTACACTCCAGCAGGAGTGGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAAAAGGAAGCCGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCCGAGACCTGTGCGAACTACTTGCGCAAAGGACGCCTGGCTGCAGTCGAAGGACGCATTCAAGTACGG
AACTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAATGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAGCGGTGGCGGCGGTGGGCAACCAATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGACGCGCGAACAATA
ACAATAATTCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9UHS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

49.133

100

0.528
  ssb Neisseria meningitidis MC58

33.889

100

0.379
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.565

0.379
  ssb Neisseria gonorrhoeae MS11

33.146

100

0.366