Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QPL84_RS18510 Genome accession   NZ_CP126525
Coordinates   3633693..3634931 (-) Length   412 a.a.
NCBI ID   WP_000990726.1    Uniprot ID   A0A2C4TG35
Organism   Bacillus toyonensis strain Puebla_S2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3628693..3639931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL84_RS18490 (QPL84_18490) rny 3629478..3631043 (-) 1566 WP_000204713.1 ribonuclease Y -
  QPL84_RS18495 (QPL84_18495) - 3631528..3631950 (-) 423 Protein_3588 recombinase RecA -
  QPL84_RS18500 (QPL84_18500) - 3632219..3632842 (-) 624 WP_098687627.1 topoisomerase I -
  QPL84_RS18505 (QPL84_18505) recA 3632940..3633548 (-) 609 Protein_3590 recombinase RecA -
  QPL84_RS18510 (QPL84_18510) cinA 3633693..3634931 (-) 1239 WP_000990726.1 competence/damage-inducible protein CinA Machinery gene
  QPL84_RS18515 (QPL84_18515) pgsA 3634952..3635530 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QPL84_RS18520 (QPL84_18520) - 3635594..3636508 (-) 915 WP_000137455.1 helix-turn-helix domain-containing protein -
  QPL84_RS18525 (QPL84_18525) - 3636530..3637315 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QPL84_RS18530 (QPL84_18530) - 3637454..3637702 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  QPL84_RS18535 (QPL84_18535) - 3637778..3638491 (-) 714 WP_000759598.1 SDR family oxidoreductase -
  QPL84_RS18540 (QPL84_18540) - 3638592..3639878 (-) 1287 WP_000411962.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45462.81 Da        Isoelectric Point: 5.4733

>NTDB_id=838423 QPL84_RS18510 WP_000990726.1 3633693..3634931(-) (cinA) [Bacillus toyonensis strain Puebla_S2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDKNALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKVIELLKKKGLTLACAESLSGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=838423 QPL84_RS18510 WP_000990726.1 3633693..3634931(-) (cinA) [Bacillus toyonensis strain Puebla_S2]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACAAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGTGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTATCAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C4TG35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.849

91.505

0.374