Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   VF946_RS05670 Genome accession   NZ_CP141824
Coordinates   1076013..1077692 (-) Length   559 a.a.
NCBI ID   WP_395424540.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071013..1082692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS05645 - 1072487..1073071 (-) 585 WP_002294511.1 recombinase zinc beta ribbon domain-containing protein -
  VF946_RS05650 - 1073142..1073591 (+) 450 WP_242952495.1 hypothetical protein -
  VF946_RS05655 - 1073642..1073893 (-) 252 WP_002294510.1 hypothetical protein -
  VF946_RS05660 - 1074017..1075171 (-) 1155 WP_105140797.1 helix-turn-helix domain-containing protein -
  VF946_RS05665 - 1075253..1075888 (-) 636 WP_105140796.1 CpXC domain-containing protein -
  VF946_RS05670 comEC/celB 1076013..1077692 (-) 1680 WP_395424540.1 ComEC/Rec2 family competence protein Machinery gene
  VF946_RS05675 comEA/celA/cilE 1077676..1078338 (-) 663 WP_024405509.1 helix-hairpin-helix domain-containing protein Machinery gene
  VF946_RS05680 - 1078405..1079151 (-) 747 WP_014735985.1 lysophospholipid acyltransferase family protein -
  VF946_RS05685 - 1079297..1080742 (+) 1446 WP_024405510.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  VF946_RS05690 - 1080894..1081679 (+) 786 WP_011922762.1 ABC transporter ATP-binding protein -
  VF946_RS05695 - 1081692..1082621 (+) 930 WP_238716824.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63172.54 Da        Isoelectric Point: 8.9424

>NTDB_id=838182 VF946_RS05670 WP_395424540.1 1076013..1077692(-) (comEC/celB) [Streptococcus suis strain HB18]
MSRLSKLPCQPVHLAVLAVAAYFAVHSFSLLTMCLLSLVLAVFGVRQGKTVFLKTLPLLTLCGLFFGCQKVQWERAAQSA
PEQVTTVQVIPDTIDINGDSLSFRGRADGQNYQVFYKLTSQEEQTYFQNLADLVQLEVEAEVSLPAGQRNFKGFDYQAYL
KTQGIYRTVKLTAIKKIVPVQSWNVFDWLSTWRRQALVYVKINFPAPMSHYMTGLLFGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWILLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFICLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPVVKMTWVNGFFIFMEKIIVWVADLGLRPWILGKPSELVLLLLLVSLFLLYDFHRRKKWLLGLSLVLALLFFITK
HPLENEVTVLDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSRQANAERTLIPYLHSRGVDRIDSLVLTHTEV

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=838182 VF946_RS05670 WP_395424540.1 1076013..1077692(-) (comEC/celB) [Streptococcus suis strain HB18]
ATGTCACGGTTGAGTAAGCTCCCCTGCCAGCCCGTTCACCTGGCAGTCTTGGCGGTGGCAGCTTACTTTGCAGTCCACTC
TTTTTCCCTCTTGACAATGTGCCTGCTCAGCTTGGTGTTAGCTGTCTTTGGTGTTCGGCAAGGTAAGACAGTTTTCCTCA
AAACGCTGCCGCTTCTAACCCTGTGTGGTCTCTTTTTCGGATGCCAAAAGGTCCAATGGGAGCGGGCAGCTCAGTCAGCC
CCAGAGCAAGTGACGACTGTGCAGGTCATTCCAGATACCATAGACATCAATGGCGACAGCTTGTCTTTTCGTGGTCGGGC
TGATGGACAAAACTATCAGGTTTTCTACAAATTAACCAGTCAGGAGGAGCAGACCTATTTTCAAAATCTGGCAGACCTGG
TCCAGCTAGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCAGCGGAATTTCAAGGGCTTTGACTATCAGGCCTATCTG
AAAACACAGGGCATCTATCGGACTGTCAAGCTAACGGCGATTAAGAAGATTGTCCCTGTCCAGTCTTGGAATGTTTTTGA
CTGGCTGTCAACTTGGCGGAGGCAGGCCTTGGTCTATGTCAAAATCAATTTTCCGGCTCCCATGAGTCACTACATGACAG
GGCTTTTGTTTGGGGAGCTGGATAGTGATTTTGACCAGATGAGTGACCTCTATTCCAGTCTAGGAATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTGGGCTTTTTCATCGACAAGTTTCGTTGGATTTTGTTGCGTCTGGGCTTGACCAAGGAAAC
AGTGGATAAGTTACAAATTCCCTTTTCCCTTGTCTATGCTGGTTTGACAGGCTTTTCTGTGTCGGTGGTGCGGTCCTTGG
TCCAAAAAATTCTGGGTAATCTAGGCTTGCGGAAGTTGGATAATTTTGCGGTGACGGTCTTTATCTGTCTGTTGATACTG
CCCCGATTTTTACTGACAGCAGGAGGAGTGCTGACTTTTACTTATGCTTTCTTGCTGACGGTCTTTGATTTTGAGGATTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAGAGCCTCAGTATTTCACTGGGAATTTTGCCGGTGCTTATGACCTATTTCTATG
CCTTTCAGCCTCTATCTATCCTCTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTACTCTTGCCAGGTTTGTCAGTC
ATTTTTCTCCTGTCGCCAGTTGTCAAGATGACTTGGGTCAACGGATTTTTCATCTTTATGGAGAAAATCATTGTCTGGGT
GGCTGATTTGGGATTGCGGCCTTGGATACTGGGCAAGCCGTCTGAGCTGGTCCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TGCTCTACGATTTCCACAGGAGAAAGAAATGGCTTCTAGGACTGAGCTTGGTCCTCGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAAAATGAGGTGACGGTGCTGGACATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTAGGCGGACGAGTCGATTTCGCGGCCAAGGAAGCGTGGCAGGAGCGGTCTCGGCAGGCAAATGCAG
AGCGGACTTTGATTCCCTATCTGCATAGTCGGGGTGTGGATAGGATTGATAGTTTAGTCCTGACCCACACCGAAGTGTGA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-175)

Competence protein (Competence)

(215-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

52.432

99.284

0.521
  comEC/celB Streptococcus mitis NCTC 12261

51.724

98.569

0.51
  comEC/celB Streptococcus pneumoniae TIGR4

51.277

98.032

0.503
  comEC/celB Streptococcus pneumoniae Rx1

51.095

98.032

0.501
  comEC/celB Streptococcus pneumoniae D39

51.095

98.032

0.501
  comEC/celB Streptococcus pneumoniae R6

51.095

98.032

0.501
  comEC Lactococcus lactis subsp. cremoris KW2

46.809

100

0.472