Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QN340_RS20970 Genome accession   NZ_CP126496
Coordinates   4145785..4146423 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain DY4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4140785..4151423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN340_RS20935 (QN340_20935) - 4141975..4142406 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  QN340_RS20940 (QN340_20940) - 4142406..4142747 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  QN340_RS20945 (QN340_20945) - 4142740..4144218 (+) 1479 WP_020452786.1 Na+/H+ antiporter subunit D -
  QN340_RS20950 (QN340_20950) - 4144224..4144700 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  QN340_RS20955 (QN340_20955) - 4144700..4144984 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  QN340_RS20960 (QN340_20960) mnhG 4144968..4145342 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  QN340_RS20965 (QN340_20965) - 4145379..4145768 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  QN340_RS20970 (QN340_20970) comA 4145785..4146423 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  QN340_RS20975 (QN340_20975) comP 4146510..4148042 (-) 1533 WP_228119635.1 sensor histidine kinase Regulator
  QN340_RS20980 (QN340_20980) - 4148145..4149467 (-) 1323 WP_020452314.1 ISL3 family transposase -
  QN340_RS20985 (QN340_20985) - 4149460..4149672 (-) 213 WP_040037657.1 hypothetical protein -
  QN340_RS20990 (QN340_20990) - 4149704..4150414 (-) 711 WP_020452313.1 GAP family protein -
  QN340_RS20995 (QN340_20995) - 4150503..4151096 (+) 594 WP_020452312.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=838182 QN340_RS20970 WP_003184849.1 4145785..4146423(-) (comA) [Bacillus paralicheniformis strain DY4]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=838182 QN340_RS20970 WP_003184849.1 4145785..4146423(-) (comA) [Bacillus paralicheniformis strain DY4]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778