Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   LL303_RS12270 Genome accession   NZ_CP126467
Coordinates   2384331..2384627 (-) Length   98 a.a.
NCBI ID   WP_010906316.1    Uniprot ID   A0A3N6L9Y1
Organism   Lactococcus lactis subsp. lactis strain 303     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2379331..2389627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL303_RS12235 (LL303_12205) - 2379621..2380487 (+) 867 WP_010906309.1 RluA family pseudouridine synthase -
  LL303_RS12240 (LL303_12210) - 2380526..2381335 (-) 810 WP_010906310.1 metal ABC transporter permease -
  LL303_RS12245 (LL303_12215) - 2381328..2382065 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  LL303_RS12250 (LL303_12220) - 2382242..2383084 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  LL303_RS12255 (LL303_12225) - 2383081..2383518 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  LL303_RS12260 (LL303_12230) comGG 2383599..2383883 (-) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  LL303_RS12265 (LL303_12235) comGF 2383922..2384368 (-) 447 WP_031558968.1 competence type IV pilus minor pilin ComGF Machinery gene
  LL303_RS12270 (LL303_12240) comGE 2384331..2384627 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  LL303_RS12275 (LL303_12245) comGD 2384599..2384997 (-) 399 WP_023164614.1 competence type IV pilus minor pilin ComGD Machinery gene
  LL303_RS12280 (LL303_12250) comGC 2384990..2385373 (-) 384 WP_010906318.1 competence type IV pilus major pilin ComGC Machinery gene
  LL303_RS12285 (LL303_12255) comGB 2385387..2386460 (-) 1074 WP_095348492.1 competence type IV pilus assembly protein ComGB Machinery gene
  LL303_RS12290 (LL303_12260) comGA 2386354..2387292 (-) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11076.95 Da        Isoelectric Point: 6.4684

>NTDB_id=838048 LL303_RS12270 WP_010906316.1 2384331..2384627(-) (comGE) [Lactococcus lactis subsp. lactis strain 303]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=838048 LL303_RS12270 WP_010906316.1 2384331..2384627(-) (comGE) [Lactococcus lactis subsp. lactis strain 303]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N6L9Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

68.041

98.98

0.673