Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VA243_RS07395 Genome accession   NZ_CP141774
Coordinates   1530429..1531472 (+) Length   347 a.a.
NCBI ID   WP_202132985.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525429..1536472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS07360 - 1526019..1526237 (+) 219 WP_001868213.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  VA243_RS07365 ccoP 1526239..1527117 (+) 879 WP_324714656.1 cytochrome-c oxidase, cbb3-type subunit III -
  VA243_RS07370 - 1527128..1527334 (+) 207 WP_000670516.1 DUF4006 family protein -
  VA243_RS07375 - 1527435..1528019 (+) 585 WP_001919568.1 hypothetical protein -
  VA243_RS07380 - 1528031..1528612 (+) 582 WP_058060439.1 hypothetical protein -
  VA243_RS07385 - 1528700..1529467 (+) 768 WP_324714657.1 hypothetical protein -
  VA243_RS07390 - 1529464..1530330 (-) 867 WP_324714658.1 menaquinone biosynthesis family protein -
  VA243_RS07395 recA 1530429..1531472 (+) 1044 WP_202132985.1 recombinase RecA Machinery gene
  VA243_RS07400 eno 1531484..1532764 (+) 1281 WP_000955621.1 phosphopyruvate hydratase -
  VA243_RS07405 - 1532757..1533032 (+) 276 WP_000146224.1 hypothetical protein -
  VA243_RS07410 - 1533048..1533644 (+) 597 WP_324714659.1 AMIN domain-containing protein -
  VA243_RS07415 - 1533649..1534137 (+) 489 WP_001216271.1 shikimate kinase -
  VA243_RS07420 - 1534159..1535115 (+) 957 WP_000952289.1 PDC sensor domain-containing protein -
  VA243_RS07425 - 1535112..1536239 (-) 1128 WP_324714660.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37683.43 Da        Isoelectric Point: 5.7176

>NTDB_id=837892 VA243_RS07395 WP_202132985.1 1530429..1531472(+) (recA) [Helicobacter pylori strain P07353]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQIEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=837892 VA243_RS07395 WP_202132985.1 1530429..1531472(+) (recA) [Helicobacter pylori strain P07353]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAATAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATC
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
ATTGGGCGTGGATACAGAAAATTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAAATTTTAGAAACGATCA
CAAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCTGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAGGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAATGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Staphylococcus aureus strain ATCC 12600

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Acinetobacter nosocomialis M2

62.573

98.559

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

63.303

94.236

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.607

96.83

0.597
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae R36A

55.84

100

0.565
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus thermophilus LMD-9

56.667

95.101

0.539
  recA Streptococcus thermophilus LMG 18311

56.667

95.101

0.539
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53