Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QN096_RS00935 Genome accession   NZ_CP126342
Coordinates   191131..192624 (-) Length   497 a.a.
NCBI ID   WP_236210631.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 186131..197624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS00925 (QN096_00925) - 187031..189007 (+) 1977 WP_044400761.1 methyl-accepting chemotaxis protein -
  QN096_RS00930 (QN096_00930) betT 189048..191024 (-) 1977 WP_284547602.1 choline BCCT transporter BetT -
  QN096_RS00935 (QN096_00935) comM 191131..192624 (-) 1494 WP_236210631.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QN096_RS00940 (QN096_00940) - 192662..192925 (-) 264 WP_044400771.1 accessory factor UbiK family protein -
  QN096_RS00945 (QN096_00945) glnK 193336..193674 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  QN096_RS00950 (QN096_00950) - 193709..195028 (+) 1320 WP_044400778.1 ammonium transporter -
  QN096_RS00955 (QN096_00955) - 195146..195571 (+) 426 WP_044400781.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QN096_RS00960 (QN096_00960) sutA 195647..195967 (+) 321 WP_044400784.1 transcriptional regulator SutA -
  QN096_RS00965 (QN096_00965) - 196025..196729 (-) 705 WP_284547603.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52777.68 Da        Isoelectric Point: 7.7493

>NTDB_id=837740 QN096_RS00935 WP_236210631.1 191131..192624(-) (comM) [Pseudomonas otitidis strain TL17]
MSLALVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSALLTSGFEFPLRRITLSLAPADLPKEGGR
FDLAVALGILAASGQVPAAALEQLECLGELALSGALRPVQGVLPAALAARAAGRALVVPRENAEEASLASGLTVFAVGHL
LELAAHLNGQSPLAPFQSQGLPLQAAPYPDLADVQGQLAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASQSPLACWPQRPFRQPHHSASGPALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIIIARANDRVRFPARFQLVAAMNPCPCGYLGDETHRCRCTPEQIQRYRARLSGPLLDRIDLHLTVAREATHLGAPVSG
GLDSATAAREVGRARRRQLARQGCANAFLDLSRLHRHCPLTPDDQHWLEQACERLGLSLRAAHRLIKVARTLADLADAPD
IQRHHLAEALQYRPTSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=837740 QN096_RS00935 WP_236210631.1 191131..192624(-) (comM) [Pseudomonas otitidis strain TL17]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCCCCCGCCGTCACGGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGTCCCTGGCCCTGGTCGGCCTCCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCACCAGCGGTTTCGAATTCCCCCTGCGGCGCATCACCCTCAGCCTTGCACCAGCCGATCTTCCCAAGGAAGGCGGACGC
TTCGACCTGGCCGTCGCCCTCGGCATCCTCGCGGCCAGCGGCCAGGTGCCCGCCGCAGCCCTGGAGCAGTTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGTGCCCTGCGTCCGGTGCAGGGCGTGTTACCCGCTGCGCTGGCGGCTCGCGCTGCCGGAC
GGGCGCTGGTGGTGCCCCGGGAGAACGCCGAGGAGGCCAGCCTGGCCAGCGGCCTGACGGTGTTCGCTGTGGGCCACCTG
CTGGAGCTGGCCGCCCACCTCAACGGCCAGTCGCCGCTGGCACCGTTCCAGAGCCAGGGCCTGCCGCTGCAGGCCGCGCC
CTATCCCGACCTCGCTGACGTCCAGGGCCAGTTGGCAGCCAAGCGCGCGCTGCTGGTGGCCGCCGCCGGAGCCCACAACC
TGTTGCTGTCCGGCCCGCCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGAGGAG
CACGAGGCCCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCAATCGCCGCTGGCGTGCTGGCCCCAGCGTCCCTTCAG
GCAGCCTCACCACAGCGCGTCCGGCCCGGCCCTGGTGGGTGGGGGCAGTCGTCCGAAACCTGGCGAGATCACCCTGGCGC
ACCAGGGTGTGCTGTTCCTCGACGAACTGCCGGAATTCGACCGCAAGGTGCTGGAGGTCCTCCGAGAGCCCCTGGAAAGC
GGCGAGATCATCATCGCCCGGGCCAACGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACGAGACCCACCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGGGCCCGGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAAGCCACACATCTTGGCGCGCCCGTCAGCGGC
GGGCTCGACAGTGCCACCGCTGCCCGGGAAGTCGGACGAGCCCGGCGTCGGCAACTGGCTCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGTCCCGGCTGCACCGGCACTGTCCGCTGACGCCCGACGACCAGCATTGGCTGGAGCAGGCCTGCGAGC
GCCTCGGGTTGTCCCTGCGTGCCGCGCACCGGCTGATCAAGGTGGCCCGCACCCTCGCCGACCTGGCGGACGCGCCCGAC
ATCCAGCGCCATCACCTGGCAGAAGCCCTGCAGTACCGGCCGACCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.942

100

0.569
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Glaesserella parasuis strain SC1401

55.07

100

0.557
  comM Haemophilus influenzae Rd KW20

55.289

100

0.557
  comM Legionella pneumophila str. Paris

50.198

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.238

100

0.459