Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN095_RS01655 Genome accession   NZ_CP126341
Coordinates   349660..350184 (+) Length   174 a.a.
NCBI ID   WP_284557662.1    Uniprot ID   -
Organism   Enterobacter cloacae strain TL15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 344660..355184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN095_RS01635 (QN095_01635) aphA 344984..345697 (+) 714 WP_013095066.1 acid phosphatase AphA -
  QN095_RS01640 (QN095_01640) - 345810..346226 (+) 417 WP_013095067.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QN095_RS01645 (QN095_01645) - 346229..346582 (+) 354 WP_013095068.1 MmcQ/YjbR family DNA-binding protein -
  QN095_RS01650 (QN095_01650) uvrA 346586..349408 (-) 2823 WP_013095069.1 excinuclease ABC subunit UvrA -
  QN095_RS01655 (QN095_01655) ssb 349660..350184 (+) 525 WP_284557662.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QN095_RS01660 (QN095_01660) - 350285..350920 (+) 636 WP_038418467.1 hypothetical protein -
  QN095_RS01665 (QN095_01665) - 350982..351263 (-) 282 WP_008503385.1 YjcB family protein -
  QN095_RS01670 (QN095_01670) - 351923..353488 (+) 1566 WP_161669867.1 EAL domain-containing protein -
  QN095_RS01675 (QN095_01675) soxS 353495..353821 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  QN095_RS01680 (QN095_01680) soxR 353919..354377 (+) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.70 Da        Isoelectric Point: 5.9207

>NTDB_id=837719 QN095_RS01655 WP_284557662.1 349660..350184(+) (ssb) [Enterobacter cloacae strain TL15]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGKQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=837719 QN095_RS01655 WP_284557662.1 349660..350184(+) (ssb) [Enterobacter cloacae strain TL15]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCAACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAGTACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGTGGCGCTCCAGCAGGTGGCGGTAAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCCGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

46.629

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374