Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN094_RS18220 Genome accession   NZ_CP126339
Coordinates   3927833..3928372 (-) Length   179 a.a.
NCBI ID   WP_002438358.1    Uniprot ID   H5V742
Organism   Atlantibacter hermannii strain TL13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3922833..3933372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN094_RS18200 (QN094_18200) - 3923006..3924610 (-) 1605 WP_043866090.1 EAL domain-containing protein -
  QN094_RS18205 (QN094_18205) - 3924898..3926295 (-) 1398 WP_002433957.1 sensor domain-containing diguanylate cyclase -
  QN094_RS18210 (QN094_18210) - 3926869..3927147 (+) 279 WP_220397106.1 YjcB family protein -
  QN094_RS18215 (QN094_18215) - 3927182..3927526 (-) 345 WP_002433952.1 hypothetical protein -
  QN094_RS18220 (QN094_18220) ssb 3927833..3928372 (-) 540 WP_002438358.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QN094_RS18225 (QN094_18225) uvrA 3928633..3931470 (+) 2838 WP_002438359.1 excinuclease ABC subunit UvrA -
  QN094_RS18230 (QN094_18230) - 3931472..3931825 (-) 354 WP_002438361.1 MmcQ/YjbR family DNA-binding protein -
  QN094_RS18235 (QN094_18235) - 3931822..3932244 (-) 423 WP_002438362.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19380.37 Da        Isoelectric Point: 5.2358

>NTDB_id=837711 QN094_RS18220 WP_002438358.1 3927833..3928372(-) (ssb) [Atlantibacter hermannii strain TL13]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=837711 QN094_RS18220 WP_002438358.1 3927833..3928372(-) (ssb) [Atlantibacter hermannii strain TL13]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCACCAGCCTCATCTAACAATGAGCCGCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H5V742

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.196

100

0.732
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.603
  ssb Neisseria meningitidis MC58

46.154

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.464
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.464

100

0.369