Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH687_RS18340 Genome accession   NZ_CP126321
Coordinates   789625..790179 (-) Length   184 a.a.
NCBI ID   WP_059575676.1    Uniprot ID   A0AAW7SR78
Organism   Burkholderia anthina strain SO82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 784625..795179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH687_RS18335 (OH687_04120) - 787346..789121 (-) 1776 WP_316376297.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  OH687_RS18340 (OH687_04125) ssb 789625..790179 (-) 555 WP_059575676.1 single-stranded DNA-binding protein Machinery gene
  OH687_RS18345 (OH687_04130) - 790276..791469 (-) 1194 WP_059575675.1 MFS transporter -
  OH687_RS18350 (OH687_04145) uvrA 791734..794619 (+) 2886 WP_059642614.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18832.63 Da        Isoelectric Point: 5.3476

>NTDB_id=837576 OH687_RS18340 WP_059575676.1 789625..790179(-) (ssb) [Burkholderia anthina strain SO82]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVAEQMQMLGGRGGSGGGGGGGDEGGYGGGYGGGGGGRGEQMERGGGGGGRAGGAARGGAS
GGGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=837576 OH687_RS18340 WP_059575676.1 789625..790179(-) (ssb) [Burkholderia anthina strain SO82]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAACCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGCCTCGCGACGACCGACCGCTACAAGGACAAGGCAAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ATCGCGTCGCGTTCTTCGGCCGTCTGGCGGAAATCGTCAGCGAATACCTGAAGAAGGGGTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTCGCCGAACAGATGCAGAT
GCTCGGCGGCCGCGGCGGTTCGGGCGGCGGCGGTGGCGGCGGTGACGAAGGCGGTTATGGCGGCGGCTACGGCGGTGGCG
GCGGCGGTCGCGGCGAGCAGATGGAGCGTGGCGGTGGCGGCGGCGGTCGTGCCGGCGGCGCGGCGCGCGGCGGTGCAAGT
GGCGGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.969

100

0.516
  ssb Glaesserella parasuis strain SC1401

45.789

100

0.473
  ssb Neisseria meningitidis MC58

42.391

100

0.424
  ssb Neisseria gonorrhoeae MS11

42.391

100

0.424
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375