Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | VA249_RS12960 | Genome accession | NZ_AP024165 |
| Coordinates | 2813149..2813742 (-) | Length | 197 a.a. |
| NCBI ID | WP_221068218.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain 04Ya108 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2808149..2818742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA249_RS12940 (VYA_24300) | aroB | 2809075..2810175 (-) | 1101 | WP_221068216.1 | 3-dehydroquinate synthase | - |
| VA249_RS12945 (VYA_24310) | aroK | 2810204..2810722 (-) | 519 | WP_099080818.1 | shikimate kinase AroK | - |
| VA249_RS12950 (VYA_24320) | pilQ | 2810911..2812590 (-) | 1680 | WP_420864276.1 | type IV pilus secretin PilQ | Machinery gene |
| VA249_RS12955 (VYA_24330) | pilP | 2812650..2813159 (-) | 510 | WP_221068217.1 | pilus assembly protein PilP | Machinery gene |
| VA249_RS12960 (VYA_24340) | pilO | 2813149..2813742 (-) | 594 | WP_221068218.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VA249_RS12965 (VYA_24350) | pilN | 2813735..2814310 (-) | 576 | WP_221068219.1 | PilN domain-containing protein | Machinery gene |
| VA249_RS12970 (VYA_24360) | pilM | 2814294..2815307 (-) | 1014 | WP_221068220.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| VA249_RS12975 (VYA_24370) | - | 2815449..2818013 (+) | 2565 | WP_221068221.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23374.79 Da Isoelectric Point: 4.9243
>NTDB_id=83743 VA249_RS12960 WP_221068218.1 2813149..2813742(-) (pilO) [Vibrio alfacsensis strain 04Ya108]
MVNWQDLDVDEMFEWPIQAQSVAILIFIFVFQIVCYWFYLKPENQRLNDLVQKEQSLRTEFQIKANRAAALPQLQSQVDE
LTSRYEQLLLQLPAERELATMLASINQLGIDSNLKFTRMDWGQKQVEHFFYRLPLELELTGDFHDIGRFTQAMAALPRII
VFQDVIWQRVSQESESLHFRIKANTYQLKSEDKKNEK
MVNWQDLDVDEMFEWPIQAQSVAILIFIFVFQIVCYWFYLKPENQRLNDLVQKEQSLRTEFQIKANRAAALPQLQSQVDE
LTSRYEQLLLQLPAERELATMLASINQLGIDSNLKFTRMDWGQKQVEHFFYRLPLELELTGDFHDIGRFTQAMAALPRII
VFQDVIWQRVSQESESLHFRIKANTYQLKSEDKKNEK
Nucleotide
Download Length: 594 bp
>NTDB_id=83743 VA249_RS12960 WP_221068218.1 2813149..2813742(-) (pilO) [Vibrio alfacsensis strain 04Ya108]
ATGGTTAATTGGCAAGACTTGGATGTGGATGAGATGTTTGAATGGCCAATACAGGCTCAGAGCGTCGCAATATTGATCTT
TATTTTTGTGTTTCAGATCGTTTGCTATTGGTTTTATTTGAAACCCGAGAATCAGCGGCTTAACGATCTTGTTCAAAAGG
AGCAATCCCTGCGAACAGAATTTCAAATCAAAGCGAATAGGGCTGCAGCCTTGCCTCAATTGCAATCACAAGTCGATGAG
TTGACCTCGCGATATGAGCAGTTGTTACTGCAATTACCCGCAGAAAGAGAGCTAGCTACCATGTTGGCATCAATCAATCA
GCTTGGTATCGACAGCAACCTTAAGTTCACTCGAATGGATTGGGGGCAAAAGCAGGTTGAGCACTTTTTTTATCGACTGC
CTCTTGAACTCGAGTTAACCGGGGATTTTCATGATATTGGACGTTTTACTCAAGCGATGGCGGCATTACCCCGAATTATT
GTTTTTCAGGATGTAATTTGGCAGCGAGTGAGTCAAGAAAGTGAGTCATTGCACTTTCGTATTAAAGCGAATACCTACCA
ACTCAAGTCTGAAGACAAGAAAAATGAAAAATAA
ATGGTTAATTGGCAAGACTTGGATGTGGATGAGATGTTTGAATGGCCAATACAGGCTCAGAGCGTCGCAATATTGATCTT
TATTTTTGTGTTTCAGATCGTTTGCTATTGGTTTTATTTGAAACCCGAGAATCAGCGGCTTAACGATCTTGTTCAAAAGG
AGCAATCCCTGCGAACAGAATTTCAAATCAAAGCGAATAGGGCTGCAGCCTTGCCTCAATTGCAATCACAAGTCGATGAG
TTGACCTCGCGATATGAGCAGTTGTTACTGCAATTACCCGCAGAAAGAGAGCTAGCTACCATGTTGGCATCAATCAATCA
GCTTGGTATCGACAGCAACCTTAAGTTCACTCGAATGGATTGGGGGCAAAAGCAGGTTGAGCACTTTTTTTATCGACTGC
CTCTTGAACTCGAGTTAACCGGGGATTTTCATGATATTGGACGTTTTACTCAAGCGATGGCGGCATTACCCCGAATTATT
GTTTTTCAGGATGTAATTTGGCAGCGAGTGAGTCAAGAAAGTGAGTCATTGCACTTTCGTATTAAAGCGAATACCTACCA
ACTCAAGTCTGAAGACAAGAAAAATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
69.312 |
95.939 |
0.665 |
| pilO | Vibrio cholerae strain A1552 |
55.497 |
96.954 |
0.538 |