Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN061_RS01420 Genome accession   NZ_CP126305
Coordinates   303759..304289 (+) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 298759..309289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS01405 (QN061_01405) uvrA 298869..301691 (-) 2823 WP_020332212.1 excinuclease ABC subunit UvrA -
  QN061_RS01410 (QN061_01410) galU 301829..302698 (-) 870 WP_020332213.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QN061_RS01415 (QN061_01415) qstR 302826..303476 (-) 651 WP_020332214.1 LuxR C-terminal-related transcriptional regulator Regulator
  QN061_RS01420 (QN061_01420) ssb 303759..304289 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  QN061_RS01425 (QN061_01425) csrD 304425..306419 (+) 1995 WP_020332216.1 RNase E specificity factor CsrD -
  QN061_RS01430 (QN061_01430) - 306427..307875 (+) 1449 WP_020332217.1 MSHA biogenesis protein MshI -
  QN061_RS01435 (QN061_01435) - 307872..308522 (+) 651 WP_020332218.1 MSHA biogenesis protein MshJ -
  QN061_RS01440 (QN061_01440) - 308548..308826 (+) 279 WP_020332219.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=837410 QN061_RS01420 WP_020332215.1 303759..304289(+) (ssb) [Vibrio fluvialis strain SD21SC3889PM]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=837410 QN061_RS01420 WP_020332215.1 303759..304289(+) (ssb) [Vibrio fluvialis strain SD21SC3889PM]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGCATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAACAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489