Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QN061_RS01415 Genome accession   NZ_CP126305
Coordinates   302826..303476 (-) Length   216 a.a.
NCBI ID   WP_020332214.1    Uniprot ID   S7HVB1
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 297826..308476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS01405 (QN061_01405) uvrA 298869..301691 (-) 2823 WP_020332212.1 excinuclease ABC subunit UvrA -
  QN061_RS01410 (QN061_01410) galU 301829..302698 (-) 870 WP_020332213.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QN061_RS01415 (QN061_01415) qstR 302826..303476 (-) 651 WP_020332214.1 LuxR C-terminal-related transcriptional regulator Regulator
  QN061_RS01420 (QN061_01420) ssb 303759..304289 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  QN061_RS01425 (QN061_01425) csrD 304425..306419 (+) 1995 WP_020332216.1 RNase E specificity factor CsrD -
  QN061_RS01430 (QN061_01430) - 306427..307875 (+) 1449 WP_020332217.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24897.68 Da        Isoelectric Point: 9.2330

>NTDB_id=837409 QN061_RS01415 WP_020332214.1 302826..303476(-) (qstR) [Vibrio fluvialis strain SD21SC3889PM]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLVPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQSSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=837409 QN061_RS01415 WP_020332214.1 302826..303476(-) (qstR) [Vibrio fluvialis strain SD21SC3889PM]
ATGCAACGAGCTAACTACGCCCGAACTATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGTACCACTGCGCTTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGATGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAATCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGTCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGGGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7HVB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528