Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QN061_RS00100 Genome accession   NZ_CP126305
Coordinates   22326..23849 (+) Length   507 a.a.
NCBI ID   WP_284162072.1    Uniprot ID   -
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17326..28849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS00085 (QN061_00085) ilvE 18948..19889 (-) 942 WP_020332585.1 branched-chain-amino-acid transaminase -
  QN061_RS00090 (QN061_00090) ilvM 19901..20185 (-) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  QN061_RS00095 (QN061_00095) ilvG 20197..21843 (-) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  QN061_RS00100 (QN061_00100) comM 22326..23849 (+) 1524 WP_284162072.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QN061_RS00105 (QN061_00105) - 23953..24846 (+) 894 WP_020332582.1 acyltransferase -
  QN061_RS00110 (QN061_00110) - 24887..25486 (-) 600 WP_032082180.1 thiol:disulfide interchange protein DsbA/DsbL -
  QN061_RS00115 (QN061_00115) - 25517..26503 (-) 987 WP_020332580.1 serine/threonine protein kinase -
  QN061_RS00120 (QN061_00120) ccoG 26548..27972 (-) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  QN061_RS00125 (QN061_00125) - 28234..28500 (-) 267 WP_020332578.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55096.11 Da        Isoelectric Point: 8.7988

>NTDB_id=837406 QN061_RS00100 WP_284162072.1 22326..23849(+) (comM) [Vibrio fluvialis strain SD21SC3889PM]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQKTLSLFQSDARDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCTLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=837406 QN061_RS00100 WP_284162072.1 22326..23849(+) (comM) [Vibrio fluvialis strain SD21SC3889PM]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGTATTCTGGCTGCTTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTACCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAAAAGACGTTATCGCTGTTTCAAAGTGACGCGCGCGACGCCAGCGTACCGCG
TGAGCGCGACTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCAGCGGCGGGCAACCACAATC
TGCTGTTTCTCGGCCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCGGAGATGACTGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCAGCGCTGGTGGGCGGCGGCACCATTCCTCGTCCCGGAGAAATCTCACTTG
CTCACAATGGCCTACTGTTTCTGGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCGCTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGTGCGCAGGGTAAAACCCGTTTTCCGGCGCGTTTTCAATTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGTAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATTGAAATTCCGGCGTTGCCCAAAGGTACTTTGTCGCATGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGTTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATTGAAACTTACTGTACGCTCAGTCAGCCGGATGCGGAGTTTCTGGAAAATGCGCTGCACC
GCCTGGGGCTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGTGGTGAGGCACAC
ATTCAACGTGCGCACCTCGCCGAAGCGCTCGGGTATCGCGCTATGGACCGGTTGCTCAAACAGCTCACCGCCCAGTCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

88.955

100

0.89
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428