Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VA249_RS12705 Genome accession   NZ_AP024165
Coordinates   2755113..2755646 (-) Length   177 a.a.
NCBI ID   WP_128810047.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2750113..2760646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS12685 (VYA_23920) - 2750456..2750788 (-) 333 WP_221068194.1 MSHA biogenesis protein MshK -
  VA249_RS12690 (VYA_23930) gspM 2750781..2751431 (-) 651 WP_221068195.1 type II secretion system protein GspM -
  VA249_RS12695 (VYA_23940) - 2751428..2752876 (-) 1449 WP_221068196.1 MSHA biogenesis protein MshI -
  VA249_RS12700 (VYA_23950) csrD 2752888..2754897 (-) 2010 WP_221068197.1 RNase E specificity factor CsrD -
  VA249_RS12705 (VYA_23960) ssb 2755113..2755646 (-) 534 WP_128810047.1 single-stranded DNA-binding protein Machinery gene
  VA249_RS12710 (VYA_23970) qstR 2755924..2756568 (+) 645 WP_128810046.1 LuxR C-terminal-related transcriptional regulator Regulator
  VA249_RS12715 (VYA_23980) galU 2756728..2757600 (+) 873 WP_211915879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VA249_RS12720 (VYA_23990) uvrA 2757779..2760601 (+) 2823 WP_221068198.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19804.86 Da        Isoelectric Point: 4.8950

>NTDB_id=83739 VA249_RS12705 WP_128810047.1 2755113..2755646(-) (ssb) [Vibrio alfacsensis strain 04Ya108]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQQGSWGQPQQPAQQQYNAPQQQQQAPQQP
QQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=83739 VA249_RS12705 WP_128810047.1 2755113..2755646(-) (ssb) [Vibrio alfacsensis strain 04Ya108]
ATGGCCAGCCGTGGAATTAACAAAGTTATCTTAGTGGGAAATCTTGGCAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATTACTATTGCTACCTCTGACTCATGGCGCGATAAAGCGACTGGTGAACAGCGCGAAAAAACGG
AATGGCACCGTGTAGTGCTATTCGGTAAGCTAGCTGAAGTAGCAGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAAGGTCAATTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAGTACACAACAGAAGTTGTAGTACAAGGTTT
TAATGGCGTTATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCAATGGGTGGTCAACAACAGCAGCAGCAACAAG
GTAGTTGGGGTCAGCCACAACAACCTGCACAGCAGCAGTACAATGCACCACAACAGCAGCAACAGGCTCCGCAGCAACCA
CAGCAGCAATACAATGAGCCACCAATGGATTTCGATGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.771

100

0.797
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.599
  ssb Neisseria meningitidis MC58

46.667

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.475

Multiple sequence alignment