Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VA249_RS12710 Genome accession   NZ_AP024165
Coordinates   2755924..2756568 (+) Length   214 a.a.
NCBI ID   WP_128810046.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2750924..2761568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS12695 (VYA_23940) - 2751428..2752876 (-) 1449 WP_221068196.1 MSHA biogenesis protein MshI -
  VA249_RS12700 (VYA_23950) csrD 2752888..2754897 (-) 2010 WP_221068197.1 RNase E specificity factor CsrD -
  VA249_RS12705 (VYA_23960) ssb 2755113..2755646 (-) 534 WP_128810047.1 single-stranded DNA-binding protein Machinery gene
  VA249_RS12710 (VYA_23970) qstR 2755924..2756568 (+) 645 WP_128810046.1 LuxR C-terminal-related transcriptional regulator Regulator
  VA249_RS12715 (VYA_23980) galU 2756728..2757600 (+) 873 WP_211915879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VA249_RS12720 (VYA_23990) uvrA 2757779..2760601 (+) 2823 WP_221068198.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24682.66 Da        Isoelectric Point: 9.4033

>NTDB_id=83740 VA249_RS12710 WP_128810046.1 2755924..2756568(+) (qstR) [Vibrio alfacsensis strain 04Ya108]
MKKSAYARKLFLVSVEKHAERKVEAIEKYMDIEIPVITTDALMEANPTHRNKILVIDYAEHKYLIQSIKNLPLIWKNFET
VVFNVPKRLTTDDLLTLGQLKGIFYQYQSTEQVGEGLMGIINGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGSSNIQMAEDLFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=83740 VA249_RS12710 WP_128810046.1 2755924..2756568(+) (qstR) [Vibrio alfacsensis strain 04Ya108]
GTGAAAAAATCAGCTTACGCGAGAAAACTGTTTCTTGTCAGCGTAGAAAAACATGCTGAAAGAAAAGTAGAAGCGATAGA
GAAATACATGGATATCGAGATCCCGGTCATTACTACGGATGCCTTGATGGAGGCGAATCCTACACACCGCAACAAGATAT
TAGTGATTGACTATGCTGAACACAAATACCTGATTCAATCTATAAAGAACCTACCGCTGATTTGGAAGAACTTTGAGACC
GTCGTGTTCAACGTCCCAAAACGTCTCACCACTGATGACTTGCTGACACTCGGACAGCTAAAAGGTATTTTCTACCAGTA
CCAATCCACAGAACAAGTTGGAGAGGGACTCATGGGTATTATCAATGGGCAAAACTGGTTACCAAGAAATGTCACAAGCC
AACTGCTCCATTACTATCGCAATGTGATCAATACACATACGGCGCCAGCAACCGTTGATTTAACTATCCGTGAGCTCCAA
GTGCTTCGCTGTTTGCAAGCAGGCTCTTCAAACATTCAAATGGCGGAAGATCTTTTCGTCAGTGAATTCACCATCAAGTC
ACACTTGTATCAGATTTTTAAAAAGCTTTCGGTAAAAAATCGAGTTCAAGCAATAGCTTGGGCAGATCAAAACCTAATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

85.047

100

0.85
  qstR Vibrio parahaemolyticus RIMD 2210633

83.645

100

0.836
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment