Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U9S62_RS26930 Genome accession   NZ_CP141683
Coordinates   5804907..5805404 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain ZM21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5799907..5810404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9S62_RS26910 (U9S62_26910) pchD 5800691..5802334 (+) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  U9S62_RS26915 (U9S62_26915) pchC 5802331..5803086 (+) 756 WP_014602458.1 pyochelin biosynthesis editing thioesterase PchC -
  U9S62_RS26920 (U9S62_26920) pchB 5803086..5803391 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  U9S62_RS26925 (U9S62_26925) pchA 5803388..5804818 (+) 1431 WP_014602457.1 isochorismate synthase PchA -
  U9S62_RS26930 (U9S62_26930) ssb 5804907..5805404 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  U9S62_RS26935 (U9S62_26935) - 5805421..5806809 (-) 1389 WP_003103910.1 MFS transporter -
  U9S62_RS26940 (U9S62_26940) uvrA 5807023..5809866 (+) 2844 WP_014602449.1 excinuclease ABC subunit UvrA Machinery gene
  U9S62_RS26945 (U9S62_26945) bfr 5809937..5810401 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=837232 U9S62_RS26930 WP_003114685.1 5804907..5805404(-) (ssb) [Pseudomonas aeruginosa strain ZM21]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=837232 U9S62_RS26930 WP_003114685.1 5804907..5805404(-) (ssb) [Pseudomonas aeruginosa strain ZM21]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515