Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   U9S62_RS26940 Genome accession   NZ_CP141683
Coordinates   5807023..5809866 (+) Length   947 a.a.
NCBI ID   WP_014602449.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZM21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5802023..5814866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9S62_RS26915 (U9S62_26915) pchC 5802331..5803086 (+) 756 WP_014602458.1 pyochelin biosynthesis editing thioesterase PchC -
  U9S62_RS26920 (U9S62_26920) pchB 5803086..5803391 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  U9S62_RS26925 (U9S62_26925) pchA 5803388..5804818 (+) 1431 WP_014602457.1 isochorismate synthase PchA -
  U9S62_RS26930 (U9S62_26930) ssb 5804907..5805404 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  U9S62_RS26935 (U9S62_26935) - 5805421..5806809 (-) 1389 WP_003103910.1 MFS transporter -
  U9S62_RS26940 (U9S62_26940) uvrA 5807023..5809866 (+) 2844 WP_014602449.1 excinuclease ABC subunit UvrA Machinery gene
  U9S62_RS26945 (U9S62_26945) bfr 5809937..5810401 (-) 465 WP_003093668.1 bacterioferritin -
  U9S62_RS26950 (U9S62_26950) katA 5810532..5811980 (-) 1449 WP_003103909.1 catalase KatA -
  U9S62_RS26955 (U9S62_26955) rplQ 5812262..5812651 (-) 390 WP_003093672.1 50S ribosomal protein L17 -
  U9S62_RS26960 (U9S62_26960) - 5812695..5813696 (-) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  U9S62_RS26965 (U9S62_26965) rpsD 5813719..5814339 (-) 621 WP_003093678.1 30S ribosomal protein S4 -
  U9S62_RS26970 (U9S62_26970) rpsK 5814356..5814745 (-) 390 WP_003093689.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 947 a.a.        Molecular weight: 104723.29 Da        Isoelectric Point: 6.4808

>NTDB_id=837233 U9S62_RS26940 WP_014602449.1 5807023..5809866(+) (uvrA) [Pseudomonas aeruginosa strain ZM21]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYF
QMLGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELA
KFLSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYL
TLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVV
DIGPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCI
TGVSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGV
PEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEARE
FFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRL
RDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMSQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2844 bp        

>NTDB_id=837233 U9S62_RS26940 WP_014602449.1 5807023..5809866(+) (uvrA) [Pseudomonas aeruginosa strain ZM21]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGACGAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCTATCAGCGAGCTGGA
ACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACG
CGCGCCGGGTGGTCAACGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTC
CAGATGCTCGGTTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAACACCAGAA
GGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGCTCGC
ACCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCC
AAGTTCCTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGA
CCGGACGCTGCCGGCGATCACCGCGATGCCGGTCGGCGAAGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCC
GTGGCGAGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTG
ACCCTCGACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCT
GGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAGCGCCTGCTCGGCACCCTCA
CCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTC
GACATCGGTCCGGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGA
CTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGC
TGCTGAAGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATC
ACCGGGGTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGC
GACTACCCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCC
CGATCGGTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTTTCCGGCGTG
CCGGAGGCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGG
CGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGATATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACA
ACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAG
TTCTTCGACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCA
GAGCGCGACCACCCTCTCGGGCGGCGAGGCGCAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGA
CCCTGTACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTG
CGCGACCACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGG
CCCCGAGGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGCACGCCAGAGCAGGTGGCCGAGATGTCCCAGTCGCACA
CCGGCCACTTCCTCAAGCCGTTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(293-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.113

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.113

100

0.572
  uvrA Streptococcus pneumoniae D39

57.113

100

0.572