Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P7644_RS01455 Genome accession   NZ_CP126238
Coordinates   322887..324416 (-) Length   509 a.a.
NCBI ID   WP_404301243.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain Ylb10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 317887..329416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7644_RS01450 (P7644_01440) - 321587..322783 (+) 1197 WP_404301242.1 EAL domain-containing protein -
  P7644_RS01455 (P7644_01445) comM 322887..324416 (-) 1530 WP_404301243.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P7644_RS01460 (P7644_01450) - 324552..325283 (+) 732 WP_404301244.1 TorF family putative porin -
  P7644_RS01465 (P7644_01455) glnK 325304..325642 (+) 339 WP_404301245.1 P-II family nitrogen regulator -
  P7644_RS01470 (P7644_01460) - 325664..327043 (+) 1380 WP_404301246.1 ammonium transporter -
  P7644_RS01475 (P7644_01465) - 327138..327869 (-) 732 WP_404301247.1 IclR family transcriptional regulator -
  P7644_RS01480 (P7644_01470) - 327909..329063 (-) 1155 WP_404301248.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 53562.30 Da        Isoelectric Point: 8.1098

>NTDB_id=837222 P7644_RS01455 WP_404301243.1 322887..324416(-) (comM) [Alicycliphilus denitrificans strain Ylb10]
MSLALVQSRALLGLQAPTVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPSNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQISAERLAGWEFAGELSLSGLLRPVRGALATSLALRAQDLRMVLPPGSAEEAALVPGAEIWRARH
LLDVVHRFLPAGSTPEPADDDGWQRLAPTTPAAPTDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLAQRF
AGLLPPMSVEQALESAAIASLAGRFTSAQWMRRTTASPHHSCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPEFARSAL
EALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSGQRACRCTPDQVARYQGKLSGPLLDRIDLHVEVPQLP
AEELLNAPAGEASGAVRERVALAHERALKRQGAPNQSLQGQQLDRMAALDEAAARFLQTAAARLAWSARGTHRAVKVART
IADLAASEHVTAAHVAEAVQYRRVLRATF

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=837222 P7644_RS01455 WP_404301243.1 322887..324416(-) (comM) [Alicycliphilus denitrificans strain Ylb10]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCAGGCGCCTACCGTCACCGTGGAGGTGCATCTGGCCAA
TGGCCTGCCGAGCTTTGCGCTCGTGGGCCTGGCCGATGTCGAGGTGAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAGTTCCCGAGCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGCTTCGACCTGCCGATTGCCCTGGGCATCCTGGCCGCCAGCGGGCAGATCTCTGCGGAGCGCCTGGCCGGCTGGGAATT
CGCCGGCGAGCTGTCGCTGTCGGGCCTGCTGCGGCCCGTGCGCGGCGCGCTGGCCACCAGCCTGGCGCTGCGCGCGCAGG
ATCTGCGCATGGTGTTGCCGCCGGGCAGCGCCGAGGAGGCCGCCCTGGTGCCCGGCGCCGAGATCTGGCGCGCGCGCCAC
CTGCTGGACGTGGTGCACCGGTTCCTGCCCGCGGGCAGCACGCCCGAACCCGCAGACGACGACGGCTGGCAGCGCCTGGC
GCCGACCACGCCCGCCGCGCCCACCGATGGCCCGGATCTGGCCGACGTGAAGGGCCAGGCCGCGGCCAAGCGCGCGCTGG
AGATCGCCGCCGCCGGGGGCCATGGCCTCTTGCTGGTCGGCCCGCCGGGCTCGGGCAAGTCCATGCTGGCGCAGCGCTTT
GCCGGCCTGCTGCCGCCCATGAGCGTGGAGCAGGCGCTGGAGAGCGCGGCCATCGCCAGCCTGGCCGGGCGCTTCACGAG
CGCGCAGTGGATGCGGCGCACCACGGCCAGCCCGCACCACAGCTGCAGCGCCGTGGCCCTGGTGGGCGGGGGCTCGCCGC
CGCGGCCGGGCGAGATCTCGCTGGCGCACGAGGGCGTGCTATTCCTCGACGAATTCCCCGAGTTCGCGCGCAGCGCGCTG
GAGGCCCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATCGCGCGCGCGGCGCAGCGCGCCGAATTCCCGGCGCGCTT
CCAGCTCGTCGCCGCCATGAACCCCTGCCCCTGCGGCTTCGCGGGCTCGGGCCAGCGCGCCTGCCGCTGCACGCCGGACC
AGGTGGCGCGCTACCAGGGCAAGCTGTCCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCACAACTGCCC
GCCGAGGAACTCTTGAACGCCCCCGCCGGCGAGGCGAGCGGCGCGGTGCGCGAACGCGTGGCCCTGGCGCACGAACGTGC
ATTGAAGCGCCAGGGTGCGCCCAACCAGTCCTTGCAGGGCCAGCAGCTGGACCGCATGGCCGCGCTGGACGAGGCCGCGG
CGCGCTTCCTGCAGACCGCCGCCGCGCGCCTGGCCTGGTCGGCGCGCGGCACACACCGCGCAGTCAAGGTGGCGCGCACG
ATCGCCGACCTGGCGGCGTCGGAGCATGTCACCGCAGCCCATGTGGCCGAGGCGGTGCAGTACCGGCGCGTACTGCGCGC
TACTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.378

99.804

0.513
  comM Haemophilus influenzae Rd KW20

50.295

100

0.503
  comM Vibrio campbellii strain DS40M4

49.609

100

0.499
  comM Legionella pneumophila str. Paris

49.02

100

0.491
  comM Legionella pneumophila strain ERS1305867

49.02

100

0.491
  comM Glaesserella parasuis strain SC1401

49.209

99.411

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.661

100

0.428