Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QN244_RS02135 Genome accession   NZ_CP126171
Coordinates   485783..487312 (-) Length   509 a.a.
NCBI ID   WP_317844430.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34857     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 480783..492312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN244_RS02115 (QN244_02120) - 481977..482810 (+) 834 WP_317844428.1 alpha/beta fold hydrolase -
  QN244_RS02120 (QN244_02125) - 482835..483038 (+) 204 WP_160968670.1 hypothetical protein -
  QN244_RS02125 (QN244_02130) - 483210..484298 (+) 1089 WP_317844429.1 carotenoid 1,2-hydratase -
  QN244_RS02130 (QN244_02135) - 484357..485454 (+) 1098 WP_255421805.1 lipocalin-like domain-containing protein -
  QN244_RS02135 (QN244_02140) comM 485783..487312 (-) 1530 WP_317844430.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QN244_RS02140 (QN244_02145) - 487326..487595 (-) 270 WP_317844431.1 accessory factor UbiK family protein -
  QN244_RS02145 (QN244_02150) - 487772..488110 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  QN244_RS02150 (QN244_02155) - 488455..488550 (-) 96 Protein_423 IS110 family transposase -
  QN244_RS02155 (QN244_02160) speE 488611..489462 (-) 852 WP_317844432.1 polyamine aminopropyltransferase -
  QN244_RS02160 (QN244_02165) speA 489816..491714 (+) 1899 WP_317844433.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54235.00 Da        Isoelectric Point: 8.5197

>NTDB_id=837048 QN244_RS02135 WP_317844430.1 485783..487312(-) (comM) [Xanthomonas rydalmerensis strain DAR34857]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAFTARTL
LEVCALLNGSKTLPAATAPPAVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPSRWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARTAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADATP
GEASAVVRERVELARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASER
IATAHLTEAIAYRQLDRGEPAQAPVARSA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=837048 QN244_RS02135 WP_317844430.1 485783..487312(-) (comM) [Xanthomonas rydalmerensis strain DAR34857]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTAGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGCCTGCCGGCCACGCAGATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAGTCGCGCGATCGCGTGCGCGCCGCCCTGC
TCTGCGCGCAGTACGAATTCCCCGCACGTCGGATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCTGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAACTGGCCCTGACCGGCGAACTGCGCCCGGTCGACGGTGTCCTGCCGGCCGCGCTGGCCGCCGCCCAGGCCGGCC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCCGCACTGGCGCAACACGTGCAGGCCTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGCGCTGCTCAACGGCAGCAAGACCCTGCCCGCCGCAACGGCGCCGCCCGCGGTCGCCGCACCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCACCTGCTGC
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAGAGCGCGGCCATCGCCTCGGTCAGCGGCCGCGGCGTGGATCCGTCGCGCTGGCGGCAACGCCCGTACCGCGC
ACCGCACCACACCGCCAGTGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGTCCGGGCGAGATCTCGCTGGCGCACC
ACGGCGTGTTGTTCCTGGACGAACTGCCGGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCGGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCACCGCCGAGTTTCCCGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGCCGCTGCAGCGAGGACGCGGTGCGGCGCTACCGCGCGCGCATCTCCG
GCCCGCTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCACGACTCCCGCCACAGGCGCTGCGCGCCGATGCGACGCCC
GGCGAAGCCAGCGCCGTCGTGCGCGAGCGCGTGGAGCTGGCCCGGCAACGCCAGCAGGCGCGTGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCACGCGACGAGGCGCTGCTGGAACAGGCCATCGAAC
GTCTGCGGCTGTCGGCGCGTTCGTTGCATCGGATCCTGCGCGTAGCCCGCACCATCGCCGACCTGGACGCAAGCGAGCGC
ATCGCCACCGCGCACCTGACCGAGGCCATCGCTTACCGGCAGTTGGACCGGGGCGAGCCCGCACAGGCGCCGGTGGCCCG
CAGCGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.511

98.035

0.544
  comM Haemophilus influenzae Rd KW20

54.563

99.018

0.54
  comM Vibrio campbellii strain DS40M4

54.509

98.035

0.534
  comM Glaesserella parasuis strain SC1401

52.778

99.018

0.523
  comM Legionella pneumophila str. Paris

50.704

97.642

0.495
  comM Legionella pneumophila strain ERS1305867

50.704

97.642

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.809

100

0.462